Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NDK50_RS12165 Genome accession   NZ_CP099394
Coordinates   2724276..2725652 (-) Length   458 a.a.
NCBI ID   WP_134962641.1    Uniprot ID   -
Organism   Paraburkholderia bryophila strain CA002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2719276..2730652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK50_RS12145 (NDK50_12130) - 2719942..2720421 (-) 480 WP_272621680.1 glutathione peroxidase -
  NDK50_RS12150 (NDK50_12135) - 2720557..2722509 (+) 1953 WP_272621681.1 ATP-binding cassette domain-containing protein -
  NDK50_RS12155 (NDK50_12140) - 2722610..2723731 (+) 1122 WP_272630278.1 CaiB/BaiF CoA transferase family protein -
  NDK50_RS12160 (NDK50_12145) - 2723832..2724110 (-) 279 WP_272621682.1 DUF2866 domain-containing protein -
  NDK50_RS12165 (NDK50_12150) radA 2724276..2725652 (-) 1377 WP_134962641.1 DNA repair protein RadA Machinery gene
  NDK50_RS12170 (NDK50_12155) alr 2725692..2726762 (-) 1071 WP_272621683.1 alanine racemase -
  NDK50_RS12175 (NDK50_12160) lplT 2726983..2728290 (+) 1308 WP_272621684.1 lysophospholipid transporter LplT -
  NDK50_RS12180 (NDK50_12165) thiD 2728361..2729167 (+) 807 WP_272621685.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NDK50_RS12185 (NDK50_12170) - 2729251..2730261 (-) 1011 WP_418939697.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48622.99 Da        Isoelectric Point: 7.1651

>NTDB_id=699429 NDK50_RS12165 WP_134962641.1 2724276..2725652(-) (radA) [Paraburkholderia bryophila strain CA002]
MAKPKTLYICSECGGQSPKWAGQCPSCNAWNTLVESVAEAPSTHRFQSLAKSAPVRRLADIEASDVPRFSTGVSEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLAEIAADKRALYISGEESAAQIALRAQRLSLLEPGSKASELQLLAEIQLEKIQ
ATIAEHQPDVAVIDSIQTVYSDALTSAPGSVAQVRECAAQLTRIAKQSGTTIIMVGHVTKEGALAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAIKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQSVPGSCVLVTQEGTRPLLVEVQALVDAANA
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPKGLVVFGEVGLA
GEIRPSPRGQERLKEAAKLGFSIAVIPKANAPKQPIEGLQVVAVDRLEQAIDRVRTLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=699429 NDK50_RS12165 WP_134962641.1 2724276..2725652(-) (radA) [Paraburkholderia bryophila strain CA002]
GTGGCTAAACCCAAGACTCTGTACATCTGTAGCGAATGCGGCGGGCAATCGCCGAAATGGGCGGGTCAGTGCCCGTCATG
CAATGCGTGGAACACGCTGGTCGAATCGGTGGCGGAAGCGCCGTCCACGCACCGTTTCCAGTCGCTCGCGAAAAGCGCGC
CGGTGCGCCGTCTCGCCGACATCGAAGCCTCCGACGTGCCGCGTTTCTCCACCGGCGTCAGCGAGTTCGACCGCGTGCTC
GGCGGCGGTCTGGTGCCCGGCGGCGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAATCCACGCTGCTGCTGCAATC
GCTCGCGGAAATCGCCGCCGACAAACGCGCGCTCTATATCAGCGGCGAAGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTGTCGTTGCTGGAGCCCGGCTCGAAAGCGAGCGAGCTGCAACTGCTCGCGGAAATCCAGCTCGAAAAAATTCAG
GCCACGATCGCCGAGCATCAGCCCGACGTCGCGGTGATCGACTCGATCCAGACCGTTTATTCCGACGCGCTGACTTCCGC
GCCGGGCTCGGTGGCCCAGGTGCGCGAGTGCGCGGCGCAACTGACGCGCATCGCCAAGCAGTCGGGCACCACCATCATCA
TGGTCGGTCACGTCACCAAAGAGGGCGCGCTGGCGGGGCCGCGCGTGCTCGAACACATCGTGGATACCGTGCTGTACTTC
GAGGGCGACACGCATTCGTCGTATCGTCTCGTGCGCGCCATCAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTT
CGCGATGACCGAGCGCGGCTTGCGCGGCGTGGCCAATCCGTCGGCGCTGTTTCTGTCGCAGCACGAGCAGTCGGTGCCGG
GCTCCTGCGTGCTGGTGACGCAGGAGGGCACCCGGCCGCTGCTGGTCGAGGTGCAGGCGCTGGTCGACGCGGCCAACGCG
CCGAATCCGCGGCGGCTCGCGGTCGGTCTCGAACAGAACCGGCTCGCGATGTTGCTGGCCGTGCTGCACCGGCACGCCGG
CATTGCCTGCTTCGATCAGGACGTGTTTCTGAACGCGGTGGGCGGCGTGAAGATCACCGAACCGGCGGCCGACCTGGCCG
TGCTGCTGGCGATTCATTCGTCGATGCGCAACAAGCCGCTGCCGAAGGGCCTCGTCGTCTTCGGCGAAGTGGGGCTGGCC
GGCGAGATACGGCCGTCGCCACGAGGTCAGGAGCGGCTGAAGGAAGCGGCCAAGCTGGGCTTCTCCATCGCGGTCATTCC
GAAGGCCAATGCACCGAAACAGCCGATAGAAGGCTTACAGGTCGTTGCGGTCGATCGGCTCGAGCAGGCGATCGACCGGG
TCCGCACGCTCGAATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.892

100

0.502
  radA Streptococcus mitis SK321

47.817

100

0.478
  radA Streptococcus pneumoniae Rx1

47.505

100

0.478
  radA Streptococcus pneumoniae D39

47.505

100

0.478
  radA Streptococcus pneumoniae R6

47.505

100

0.478
  radA Streptococcus pneumoniae TIGR4

47.505

100

0.478
  radA Streptococcus mitis NCTC 12261

47.484

99.782

0.474