Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFJ22_RS16160 Genome accession   NZ_CP099390
Coordinates   3243126..3243740 (-) Length   204 a.a.
NCBI ID   WP_047501141.1    Uniprot ID   A0A5A9DFT6
Organism   Citrobacter braakii strain RHB02-E3-C05     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3238126..3248740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFJ22_RS16145 (NFJ22_16140) helD 3238350..3240404 (-) 2055 WP_049283227.1 DNA helicase IV -
  NFJ22_RS16150 (NFJ22_16145) - 3240530..3240976 (+) 447 WP_016152485.1 YccF domain-containing protein -
  NFJ22_RS16155 (NFJ22_16150) yccS 3240995..3243148 (+) 2154 WP_016152484.1 YccS family putative transporter -
  NFJ22_RS16160 (NFJ22_16155) sxy/tfoX 3243126..3243740 (-) 615 WP_047501141.1 TfoX/Sxy family DNA transformation protein Regulator
  NFJ22_RS16165 (NFJ22_16160) sulA 3243957..3244466 (+) 510 WP_032931135.1 SOS-induced cell division inhibitor SulA -
  NFJ22_RS16170 (NFJ22_16165) ompA 3244824..3245882 (+) 1059 WP_153690549.1 porin OmpA -
  NFJ22_RS16175 (NFJ22_16170) matP 3245980..3246432 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  NFJ22_RS16180 (NFJ22_16175) - 3246618..3248378 (+) 1761 WP_279263421.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23198.55 Da        Isoelectric Point: 8.6113

>NTDB_id=699411 NFJ22_RS16160 WP_047501141.1 3243126..3243740(-) (sxy/tfoX) [Citrobacter braakii strain RHB02-E3-C05]
MKEKSYARIYKSQEYLASLGTIHYRSLFGSYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=699411 NFJ22_RS16160 WP_047501141.1 3243126..3243740(-) (sxy/tfoX) [Citrobacter braakii strain RHB02-E3-C05]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCAGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGACGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTATCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACATTTCATCTCGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5A9DFT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.652

98.529

0.686