Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFJ24_RS15030 Genome accession   NZ_CP099389
Coordinates   3113015..3113629 (-) Length   204 a.a.
NCBI ID   WP_047501141.1    Uniprot ID   A0A5A9DFT6
Organism   Citrobacter braakii strain RHB02-E4-C01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3108015..3118629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFJ24_RS15015 (NFJ24_15010) helD 3108239..3110293 (-) 2055 WP_235116550.1 DNA helicase IV -
  NFJ24_RS15020 (NFJ24_15015) - 3110419..3110865 (+) 447 WP_016152485.1 YccF domain-containing protein -
  NFJ24_RS15025 (NFJ24_15020) yccS 3110884..3113037 (+) 2154 WP_016152484.1 YccS family putative transporter -
  NFJ24_RS15030 (NFJ24_15025) sxy/tfoX 3113015..3113629 (-) 615 WP_047501141.1 TfoX/Sxy family DNA transformation protein Regulator
  NFJ24_RS15035 (NFJ24_15030) sulA 3113846..3114355 (+) 510 WP_032931135.1 SOS-induced cell division inhibitor SulA -
  NFJ24_RS15040 (NFJ24_15035) ompA 3114713..3115771 (+) 1059 WP_047414154.1 porin OmpA -
  NFJ24_RS15045 (NFJ24_15040) matP 3115869..3116321 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  NFJ24_RS15050 (NFJ24_15045) - 3116507..3118267 (+) 1761 WP_049283226.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23198.55 Da        Isoelectric Point: 8.6113

>NTDB_id=699388 NFJ24_RS15030 WP_047501141.1 3113015..3113629(-) (sxy/tfoX) [Citrobacter braakii strain RHB02-E4-C01]
MKEKSYARIYKSQEYLASLGTIHYRSLFGSYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=699388 NFJ24_RS15030 WP_047501141.1 3113015..3113629(-) (sxy/tfoX) [Citrobacter braakii strain RHB02-E4-C01]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCAGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTGTCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5A9DFT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.652

98.529

0.686