Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFJ61_RS14760 Genome accession   NZ_CP099386
Coordinates   3034435..3035049 (-) Length   204 a.a.
NCBI ID   WP_016152483.1    Uniprot ID   R8X084
Organism   Citrobacter braakii strain RHB09-E4-C01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3029435..3040049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFJ61_RS14745 (NFJ61_14730) helD 3029659..3031713 (-) 2055 WP_279272337.1 DNA helicase IV -
  NFJ61_RS14750 (NFJ61_14735) - 3031839..3032285 (+) 447 WP_016152485.1 YccF domain-containing protein -
  NFJ61_RS14755 (NFJ61_14740) yccS 3032304..3034457 (+) 2154 WP_016152484.1 YccS family putative transporter -
  NFJ61_RS14760 (NFJ61_14745) sxy/tfoX 3034435..3035049 (-) 615 WP_016152483.1 TfoX/Sxy family DNA transformation protein Regulator
  NFJ61_RS14765 (NFJ61_14750) sulA 3035266..3035775 (+) 510 WP_032931135.1 SOS-induced cell division inhibitor SulA -
  NFJ61_RS14770 (NFJ61_14755) ompA 3036133..3037191 (+) 1059 WP_016156137.1 porin OmpA -
  NFJ61_RS14775 (NFJ61_14760) matP 3037290..3037742 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  NFJ61_RS14780 (NFJ61_14765) - 3037928..3039688 (+) 1761 WP_047414152.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.52 Da        Isoelectric Point: 8.6113

>NTDB_id=699320 NFJ61_RS14760 WP_016152483.1 3034435..3035049(-) (sxy/tfoX) [Citrobacter braakii strain RHB09-E4-C01]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=699320 NFJ61_RS14760 WP_016152483.1 3034435..3035049(-) (sxy/tfoX) [Citrobacter braakii strain RHB09-E4-C01]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTGTCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGTTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8X084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681