Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFJ78_RS14650 Genome accession   NZ_CP099384
Coordinates   3040164..3040778 (-) Length   204 a.a.
NCBI ID   WP_016152483.1    Uniprot ID   R8X084
Organism   Citrobacter braakii strain RHB13-SO-C07     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3035164..3045778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFJ78_RS14635 (NFJ78_14625) helD 3035388..3037442 (-) 2055 WP_019076416.1 DNA helicase IV -
  NFJ78_RS14640 (NFJ78_14630) - 3037568..3038014 (+) 447 WP_016152485.1 YccF domain-containing protein -
  NFJ78_RS14645 (NFJ78_14635) yccS 3038033..3040186 (+) 2154 WP_222186619.1 YccS family putative transporter -
  NFJ78_RS14650 (NFJ78_14640) sxy/tfoX 3040164..3040778 (-) 615 WP_016152483.1 TfoX/Sxy family DNA transformation protein Regulator
  NFJ78_RS14655 (NFJ78_14645) sulA 3040995..3041504 (+) 510 WP_032931135.1 SOS-induced cell division inhibitor SulA -
  NFJ78_RS14660 (NFJ78_14650) ompA 3041862..3042920 (+) 1059 WP_016156137.1 porin OmpA -
  NFJ78_RS14665 (NFJ78_14655) matP 3043019..3043471 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  NFJ78_RS14670 (NFJ78_14660) - 3043657..3045417 (+) 1761 WP_016156136.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.52 Da        Isoelectric Point: 8.6113

>NTDB_id=699275 NFJ78_RS14650 WP_016152483.1 3040164..3040778(-) (sxy/tfoX) [Citrobacter braakii strain RHB13-SO-C07]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=699275 NFJ78_RS14650 WP_016152483.1 3040164..3040778(-) (sxy/tfoX) [Citrobacter braakii strain RHB13-SO-C07]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTGTCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGTTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8X084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681