Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFJ83_RS15925 Genome accession   NZ_CP099382
Coordinates   3262059..3262673 (-) Length   204 a.a.
NCBI ID   WP_103283682.1    Uniprot ID   A0AAW7H3I9
Organism   Citrobacter braakii strain RHB14-SO-C08     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3257059..3267673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFJ83_RS15910 (NFJ83_15910) helD 3257283..3259337 (-) 2055 WP_103283684.1 DNA helicase IV -
  NFJ83_RS15915 (NFJ83_15915) - 3259463..3259909 (+) 447 WP_103283683.1 YccF domain-containing protein -
  NFJ83_RS15920 (NFJ83_15920) yccS 3259928..3262081 (+) 2154 WP_279265891.1 YccS family putative transporter -
  NFJ83_RS15925 (NFJ83_15925) sxy/tfoX 3262059..3262673 (-) 615 WP_103283682.1 TfoX/Sxy family DNA transformation protein Regulator
  NFJ83_RS15930 (NFJ83_15930) sulA 3262890..3263399 (+) 510 WP_019076414.1 SOS-induced cell division inhibitor SulA -
  NFJ83_RS15935 (NFJ83_15935) ompA 3263757..3264815 (+) 1059 WP_016156137.1 porin OmpA -
  NFJ83_RS15940 (NFJ83_15940) matP 3264914..3265366 (-) 453 WP_103283681.1 macrodomain Ter protein MatP -
  NFJ83_RS15945 (NFJ83_15945) - 3265552..3267312 (+) 1761 WP_016156136.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23267.66 Da        Isoelectric Point: 8.9391

>NTDB_id=699253 NFJ83_RS15925 WP_103283682.1 3262059..3262673(-) (sxy/tfoX) [Citrobacter braakii strain RHB14-SO-C08]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPRY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=699253 NFJ83_RS15925 WP_103283682.1 3262059..3262673(-) (sxy/tfoX) [Citrobacter braakii strain RHB14-SO-C08]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTGTCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGTTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGAGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.137

100

0.681