Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EL279_RS03855 Genome accession   NZ_AP018543
Coordinates   762477..764150 (+) Length   557 a.a.
NCBI ID   WP_010819297.1    Uniprot ID   -
Organism   Enterococcus faecalis strain KUB3007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 757477..769150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL279_RS03825 (KUB3007_C07110) - 758156..758386 (+) 231 WP_002355878.1 exodeoxyribonuclease VII small subunit -
  EL279_RS03830 (KUB3007_C07120) - 758386..759267 (+) 882 WP_002355879.1 polyprenyl synthetase family protein -
  EL279_RS03835 (KUB3007_C07130) - 759281..760096 (+) 816 WP_002355880.1 TlyA family RNA methyltransferase -
  EL279_RS03840 (KUB3007_C07140) - 760456..761013 (+) 558 WP_002361405.1 matrixin family metalloprotease -
  EL279_RS03845 (KUB3007_C07150) - 761018..761878 (+) 861 WP_010706683.1 hypothetical protein -
  EL279_RS03850 (KUB3007_C07160) - 762010..762459 (+) 450 WP_002358881.1 arginine repressor -
  EL279_RS03855 (KUB3007_C07170) recN 762477..764150 (+) 1674 WP_010819297.1 DNA repair protein RecN Machinery gene
  EL279_RS16220 - 764242..764352 (-) 111 WP_002383399.1 DUF4044 domain-containing protein -
  EL279_RS03865 (KUB3007_C07180) - 764420..765385 (-) 966 WP_080265875.1 magnesium transporter CorA family protein -
  EL279_RS03870 (KUB3007_C07190) - 765630..766022 (+) 393 WP_002383401.1 DUF3397 domain-containing protein -
  EL279_RS03880 (KUB3007_C07200) mraZ 766256..766741 (+) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  EL279_RS03885 (KUB3007_C07210) rsmH 766756..767712 (+) 957 WP_002355891.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  EL279_RS03890 (KUB3007_C07220) ftsL 767729..768136 (+) 408 WP_002358883.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62645.07 Da        Isoelectric Point: 4.5772

>NTDB_id=69924 EL279_RS03855 WP_010819297.1 762477..764150(+) (recN) [Enterococcus faecalis strain KUB3007]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKKLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKE
KYTQAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDSEYKTLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAHQQALALRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGIEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=69924 EL279_RS03855 WP_010819297.1 762477..764150(+) (recN) [Enterococcus faecalis strain KUB3007]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGCGGCTCCAGTGATT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGAAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGGATTGTCAACATTACTAATTTAAAAAGAATTGGGGAATATTTAGTAGATATTCATGGCCAAAACGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACAGGCGTATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGCGAAGAAGAACAATTGT
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATCGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATTCAGAATATAAAAC
ATTGTCAGATACTGTTCAAAATGCTTACTACTTACTACAAGAAGCCAGTGGAGATCTTTCTAGGTTGATTGATGGCTTAG
AACTAGACGAAGGCCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGCGATTCA
ATCGAAACGATTTTATCTTACTATGAAGAAATCACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGTGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAAACAACAAGCCGCTCATCAACAAGCGTTAGCTTTACGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTCGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACTGAATTTGAAGTCCGCTTTACA
GAGCTTGAGCATTTACAAGAAAATGGCTTAGACGGAATAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGTTGGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTGGATACAGGAGTCAGTGGCCGAGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCACAAGTGGCAGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATCGTGGCGGGTCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.517

100

0.499

Multiple sequence alignment