Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFJ84_RS15345 Genome accession   NZ_CP099381
Coordinates   3135940..3136554 (-) Length   204 a.a.
NCBI ID   WP_279265090.1    Uniprot ID   -
Organism   Citrobacter braakii strain RHB16-E2-C02     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3130940..3141554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFJ84_RS15330 (NFJ84_15315) helD 3131164..3133218 (-) 2055 WP_103766105.1 DNA helicase IV -
  NFJ84_RS15335 (NFJ84_15320) - 3133344..3133790 (+) 447 WP_153647113.1 YccF domain-containing protein -
  NFJ84_RS15340 (NFJ84_15325) yccS 3133809..3135962 (+) 2154 WP_016152484.1 YccS family putative transporter -
  NFJ84_RS15345 (NFJ84_15330) sxy/tfoX 3135940..3136554 (-) 615 WP_279265090.1 TfoX/Sxy family DNA transformation protein Regulator
  NFJ84_RS15350 (NFJ84_15335) sulA 3136772..3137281 (+) 510 WP_019076414.1 SOS-induced cell division inhibitor SulA -
  NFJ84_RS15355 (NFJ84_15340) ompA 3137639..3138697 (+) 1059 WP_016156137.1 porin OmpA -
  NFJ84_RS15360 (NFJ84_15345) matP 3138795..3139247 (-) 453 WP_149381055.1 macrodomain Ter protein MatP -
  NFJ84_RS15365 (NFJ84_15350) - 3139433..3141193 (+) 1761 WP_279265091.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23182.51 Da        Isoelectric Point: 8.6113

>NTDB_id=699230 NFJ84_RS15345 WP_279265090.1 3135940..3136554(-) (sxy/tfoX) [Citrobacter braakii strain RHB16-E2-C02]
MKEKSYARIYKSQEYLASLGTIHYRSLFGSYSLTVGDTVFAMVASGELYPRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=699230 NFJ84_RS15345 WP_279265090.1 3135940..3136554(-) (sxy/tfoX) [Citrobacter braakii strain RHB16-E2-C02]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCAGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCCTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGACGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTATCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.137

100

0.681