Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HXS64_RS17855 Genome accession   NZ_AP023235
Coordinates   3690774..3691379 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain YJ6     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3685774..3696379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS64_RS17835 aes 3685811..3686770 (+) 960 WP_000801850.1 acetyl esterase -
  HXS64_RS17840 hemH 3686767..3687729 (-) 963 WP_001250088.1 ferrochelatase -
  HXS64_RS17845 adk 3687965..3688609 (-) 645 WP_001220233.1 adenylate kinase -
  HXS64_RS17850 htpG 3688790..3690664 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  HXS64_RS17855 recR 3690774..3691379 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HXS64_RS17860 ybaB 3691379..3691708 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HXS64_RS17865 dnaX 3691761..3693692 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  HXS64_RS17870 apt 3693821..3694372 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HXS64_RS17875 ybaN 3694525..3694902 (-) 378 WP_001188905.1 DUF454 family protein -
  HXS64_RS17880 priC 3694972..3695499 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  HXS64_RS17885 rsmS 3695513..3695674 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=69922 HXS64_RS17855 WP_001195025.1 3690774..3691379(-) (recR) [Escherichia coli strain YJ6]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=69922 HXS64_RS17855 WP_001195025.1 3690774..3691379(-) (recR) [Escherichia coli strain YJ6]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment