Detailed information NTG0699210

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP78_RS07840
• Genome accession: NZ_CP115253
• Coordinates: 1675817..1676821 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F033
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1670817..1681821

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP78_RS07810 (PCP78_07815)	fghA	1670909..1671760 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PCP78_RS07815 (PCP78_07820)	ispF	1671831..1672304 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP78_RS07820 (PCP78_07825)	truD	1672301..1673368 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
PCP78_RS07825 (PCP78_07830)	surE	1673356..1674105 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP78_RS07830 (PCP78_07835)	-	1674138..1674773 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP78_RS07835 (PCP78_07840)	-	1674819..1675712 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP78_RS07840 (PCP78_07845)	rpoS	1675817..1676821 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP78_RS07845 (PCP78_07850)	fdxA	1677248..1677571 (-)	324	WP_003119354.1	ferredoxin FdxA	-
PCP78_RS07850 (PCP78_07855)	mutS	1677638..1680217 (-)	2580	WP_003105609.1	DNA mismatch repair protein MutS	-
PCP78_RS07855 (PCP78_07860)	-	1680277..1681251 (-)	975	WP_031690972.1	tyrosine-type recombinase/integrase	-
PCP78_RS07860 (PCP78_07865)	-	1681261..1681470 (-)	210	WP_071538228.1	DUF4224 domain-containing protein	-
PCP78_RS07865 (PCP78_07870)	-	1681551..1681673 (-)	123	WP_257011608.1	hypothetical protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=699210 PCP78_RS07840 WP_003113871.1 1675817..1676821(+) (rpoS) [Pseudomonas aeruginosa strain F033]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=699210 PCP78_RS07840 WP_003113871.1 1675817..1676821(+) (rpoS) [Pseudomonas aeruginosa strain F033]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653