Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFJ89_RS14360 Genome accession   NZ_CP099379
Coordinates   2978165..2978779 (-) Length   204 a.a.
NCBI ID   WP_016152483.1    Uniprot ID   R8X084
Organism   Citrobacter braakii strain RHB16-SO-C07     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2973165..2983779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFJ89_RS14345 (NFJ89_14340) helD 2973389..2975443 (-) 2055 WP_283090750.1 DNA helicase IV -
  NFJ89_RS14350 (NFJ89_14345) - 2975569..2976015 (+) 447 WP_016152485.1 YccF domain-containing protein -
  NFJ89_RS14355 (NFJ89_14350) yccS 2976034..2978187 (+) 2154 WP_016152484.1 YccS family putative transporter -
  NFJ89_RS14360 (NFJ89_14355) sxy/tfoX 2978165..2978779 (-) 615 WP_016152483.1 TfoX/Sxy family DNA transformation protein Regulator
  NFJ89_RS14365 (NFJ89_14360) sulA 2978996..2979505 (+) 510 WP_019076414.1 SOS-induced cell division inhibitor SulA -
  NFJ89_RS14370 (NFJ89_14365) ompA 2979863..2980921 (+) 1059 WP_065554532.1 porin OmpA -
  NFJ89_RS14375 (NFJ89_14370) matP 2981019..2981471 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  NFJ89_RS14380 (NFJ89_14375) - 2981657..2983417 (+) 1761 WP_016156136.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.52 Da        Isoelectric Point: 8.6113

>NTDB_id=699207 NFJ89_RS14360 WP_016152483.1 2978165..2978779(-) (sxy/tfoX) [Citrobacter braakii strain RHB16-SO-C07]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=699207 NFJ89_RS14360 WP_016152483.1 2978165..2978779(-) (sxy/tfoX) [Citrobacter braakii strain RHB16-SO-C07]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTAGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGACGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTGTCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGTTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8X084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681