Detailed information NTG0699130

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP33_RS11440
• Genome accession: NZ_CP115252
• Coordinates: 2477951..2478955 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F034
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2472951..2483955

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP33_RS11410 (PCP33_11410)	fghA	2473043..2473894 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PCP33_RS11415 (PCP33_11415)	ispF	2473965..2474438 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP33_RS11420 (PCP33_11420)	truD	2474435..2475502 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
PCP33_RS11425 (PCP33_11425)	surE	2475490..2476239 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP33_RS11430 (PCP33_11430)	-	2476272..2476907 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP33_RS11435 (PCP33_11435)	-	2476953..2477846 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP33_RS11440 (PCP33_11440)	rpoS	2477951..2478955 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP33_RS11445 (PCP33_11445)	fdxA	2479382..2479705 (-)	324	WP_003119354.1	ferredoxin FdxA	-
PCP33_RS11450 (PCP33_11450)	mutS	2479772..2482339 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PCP33_RS11455 (PCP33_11455)	-	2482465..2483472 (-)	1008	WP_328988290.1	TolB-like translocation protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=699130 PCP33_RS11440 WP_003113871.1 2477951..2478955(+) (rpoS) [Pseudomonas aeruginosa strain F034]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=699130 PCP33_RS11440 WP_003113871.1 2477951..2478955(+) (rpoS) [Pseudomonas aeruginosa strain F034]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653