Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP33_RS07090 Genome accession   NZ_CP115252
Coordinates   1555608..1556333 (-) Length   241 a.a.
NCBI ID   WP_031693667.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F034     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1550608..1561333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP33_RS07065 (PCP33_07065) - 1551080..1551595 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  PCP33_RS07070 (PCP33_07070) rarD 1552285..1553181 (-) 897 WP_023107656.1 EamA family transporter RarD -
  PCP33_RS07075 (PCP33_07075) - 1553384..1554358 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  PCP33_RS07080 (PCP33_07080) - 1554420..1555178 (-) 759 WP_034028695.1 TOBE domain-containing protein -
  PCP33_RS07085 (PCP33_07085) - 1555246..1555566 (-) 321 WP_034028698.1 YfiM family lipoprotein -
  PCP33_RS07090 (PCP33_07090) comF 1555608..1556333 (-) 726 WP_031693667.1 ComF family protein Machinery gene
  PCP33_RS07095 (PCP33_07095) - 1556472..1556765 (-) 294 WP_003084806.1 hypothetical protein -
  PCP33_RS07100 (PCP33_07100) - 1556819..1557745 (-) 927 WP_023435400.1 LysR family transcriptional regulator -
  PCP33_RS07105 (PCP33_07105) - 1557863..1558621 (+) 759 WP_034035953.1 5-oxoprolinase subunit PxpA -
  PCP33_RS07110 (PCP33_07110) - 1558698..1558946 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  PCP33_RS07115 (PCP33_07115) - 1558957..1560333 (+) 1377 WP_023126932.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  PCP33_RS07120 (PCP33_07120) - 1560335..1561213 (+) 879 WP_023081616.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26948.47 Da        Isoelectric Point: 10.8088

>NTDB_id=699121 PCP33_RS07090 WP_031693667.1 1555608..1556333(-) (comF) [Pseudomonas aeruginosa strain F034]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYTEGLPPPARLLPVPLAPRRERRRGFNQAQQLAERLAGELGLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=699121 PCP33_RS07090 WP_031693667.1 1555608..1556333(-) (comF) [Pseudomonas aeruginosa strain F034]
ATGTCGTTCCCGCTTCGTCCTCTCACACGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCATGGTCGCGCCAGCAGTGTCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGCTGCT
GGCGGAACACCTGCGGCAACGCTACACCGAAGGCCTGCCGCCCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGGCCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGCCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGTCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(9-65)

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

37.5

99.585

0.373
  comFC Legionella pneumophila str. Paris

37.826

95.436

0.361