Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFK30_RS15525 Genome accession   NZ_CP099374
Coordinates   3177359..3177973 (-) Length   204 a.a.
NCBI ID   WP_047501141.1    Uniprot ID   A0A5A9DFT6
Organism   Citrobacter braakii strain RHB25-SO-C06     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3172359..3182973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFK30_RS15510 (NFK30_15505) helD 3172583..3174637 (-) 2055 WP_109018061.1 DNA helicase IV -
  NFK30_RS15515 (NFK30_15510) - 3174763..3175209 (+) 447 WP_016152485.1 YccF domain-containing protein -
  NFK30_RS15520 (NFK30_15515) yccS 3175228..3177381 (+) 2154 WP_016152484.1 YccS family putative transporter -
  NFK30_RS15525 (NFK30_15520) sxy/tfoX 3177359..3177973 (-) 615 WP_047501141.1 TfoX/Sxy family DNA transformation protein Regulator
  NFK30_RS15530 (NFK30_15525) sulA 3178191..3178700 (+) 510 WP_019076414.1 SOS-induced cell division inhibitor SulA -
  NFK30_RS15535 (NFK30_15530) ompA 3179058..3180116 (+) 1059 WP_016156137.1 porin OmpA -
  NFK30_RS15540 (NFK30_15535) matP 3180215..3180667 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  NFK30_RS15545 (NFK30_15540) - 3180853..3182613 (+) 1761 WP_016156136.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23198.55 Da        Isoelectric Point: 8.6113

>NTDB_id=699095 NFK30_RS15525 WP_047501141.1 3177359..3177973(-) (sxy/tfoX) [Citrobacter braakii strain RHB25-SO-C06]
MKEKSYARIYKSQEYLASLGTIHYRSLFGSYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=699095 NFK30_RS15525 WP_047501141.1 3177359..3177973(-) (sxy/tfoX) [Citrobacter braakii strain RHB25-SO-C06]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCAGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAACGCGGACGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTGTCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGTTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5A9DFT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.652

98.529

0.686