Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFK58_RS16105 Genome accession   NZ_CP099373
Coordinates   3328374..3328988 (-) Length   204 a.a.
NCBI ID   WP_191227501.1    Uniprot ID   -
Organism   Citrobacter portucalensis strain RHB38-SO-C05     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3323374..3333988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFK58_RS16090 (NFK58_16110) helD 3323598..3325652 (-) 2055 WP_191227499.1 DNA helicase IV -
  NFK58_RS16095 (NFK58_16115) - 3325778..3326224 (+) 447 WP_123268218.1 YccF domain-containing protein -
  NFK58_RS16100 (NFK58_16120) yccS 3326243..3328396 (+) 2154 WP_191227500.1 YccS family putative transporter -
  NFK58_RS16105 (NFK58_16125) sxy/tfoX 3328374..3328988 (-) 615 WP_191227501.1 TfoX/Sxy family DNA transformation protein Regulator
  NFK58_RS16110 (NFK58_16130) sulA 3329206..3329715 (+) 510 WP_191227502.1 SOS-induced cell division inhibitor SulA -
  NFK58_RS16115 (NFK58_16135) ompA 3330073..3331131 (+) 1059 WP_079938031.1 porin OmpA -
  NFK58_RS16120 (NFK58_16140) matP 3331220..3331672 (-) 453 WP_079938032.1 macrodomain Ter protein MatP -
  NFK58_RS16125 (NFK58_16145) - 3331858..3333618 (+) 1761 WP_279267791.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23153.58 Da        Isoelectric Point: 9.1901

>NTDB_id=699072 NFK58_RS16105 WP_191227501.1 3328374..3328988(-) (sxy/tfoX) [Citrobacter portucalensis strain RHB38-SO-C05]
MKKLSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRVRELPNMTFHLETLLNEAGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=699072 NFK58_RS16105 WP_191227501.1 3328374..3328988(-) (sxy/tfoX) [Citrobacter portucalensis strain RHB38-SO-C05]
ATGAAAAAACTTTCTTATGCAAGGATCTATAAATCGCAGGAATACCTTGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AGCAGAGCGCTCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGCGGACGTCCTCTTGTTCTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAGCTGGTGTCGTTATCGCGATATTCATTGGATGCAGCGGT
TAAGGAAAAACAGAGCCGCTTTGCCCAGCATCGTGTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGCTGGAATTAAAGATGAGGGGACTATGCGGTCGTTAGGGGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTTTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCAGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

67.157

100

0.672