Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PCP14_RS19790 Genome accession   NZ_CP115251
Coordinates   4244793..4245122 (+) Length   109 a.a.
NCBI ID   WP_024947475.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F035     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4239793..4250122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP14_RS19775 (PCP14_19770) - 4240493..4241452 (+) 960 WP_004350973.1 UDP-glucose 4-epimerase family protein -
  PCP14_RS19780 (PCP14_19775) - 4241449..4242474 (+) 1026 WP_009313766.1 MraY family glycosyltransferase -
  PCP14_RS19785 (PCP14_19780) - 4242605..4244602 (+) 1998 WP_024947474.1 polysaccharide biosynthesis protein -
  PCP14_RS19790 (PCP14_19785) comEA/comE1 4244793..4245122 (+) 330 WP_024947475.1 ComEA family DNA-binding protein Machinery gene
  PCP14_RS19800 (PCP14_19795) - 4245339..4246535 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  PCP14_RS19805 (PCP14_19800) uvrB 4246723..4248735 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11443.41 Da        Isoelectric Point: 8.0374

>NTDB_id=699056 PCP14_RS19790 WP_024947475.1 4244793..4245122(+) (comEA/comE1) [Pseudomonas aeruginosa strain F035]
MHLIKSALLLILFACLPFSAYAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=699056 PCP14_RS19790 WP_024947475.1 4244793..4245122(+) (comEA/comE1) [Pseudomonas aeruginosa strain F035]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTACGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385