Detailed information NTG0699052

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP14_RS17370
• Genome accession: NZ_CP115251
• Coordinates: 3726761..3727765 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F035
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3721761..3732765

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP14_RS17340 (PCP14_17335)	fghA	3721853..3722704 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
PCP14_RS17345 (PCP14_17340)	ispF	3722775..3723248 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP14_RS17350 (PCP14_17345)	truD	3723245..3724312 (+)	1068	WP_024947081.1	tRNA pseudouridine(13) synthase TruD	-
PCP14_RS17355 (PCP14_17350)	surE	3724300..3725049 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP14_RS17360 (PCP14_17355)	-	3725082..3725717 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP14_RS17365 (PCP14_17360)	-	3725763..3726656 (+)	894	WP_024947082.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP14_RS17370 (PCP14_17365)	rpoS	3726761..3727765 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP14_RS17375 (PCP14_17370)	fdxA	3728193..3728516 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PCP14_RS17380 (PCP14_17375)	mutS	3728583..3731150 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PCP14_RS17385 (PCP14_17380)	-	3731276..3732283 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=699052 PCP14_RS17370 WP_003113871.1 3726761..3727765(+) (rpoS) [Pseudomonas aeruginosa strain F035]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=699052 PCP14_RS17370 WP_003113871.1 3726761..3727765(+) (rpoS) [Pseudomonas aeruginosa strain F035]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTTTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653