Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFK62_RS16115 Genome accession   NZ_CP099370
Coordinates   3244335..3244949 (-) Length   204 a.a.
NCBI ID   WP_003831996.1    Uniprot ID   A0A5A9E513
Organism   Citrobacter portucalensis strain RHB40-E3-C01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3239335..3249949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFK62_RS16100 (NFK62_16090) helD 3239559..3241613 (-) 2055 WP_149281423.1 DNA helicase IV -
  NFK62_RS16105 (NFK62_16095) - 3241739..3242185 (+) 447 WP_003831998.1 YccF domain-containing protein -
  NFK62_RS16110 (NFK62_16100) yccS 3242204..3244357 (+) 2154 WP_279274917.1 YccS family putative transporter -
  NFK62_RS16115 (NFK62_16105) sxy/tfoX 3244335..3244949 (-) 615 WP_003831996.1 TfoX/Sxy family DNA transformation protein Regulator
  NFK62_RS16120 (NFK62_16110) sulA 3245167..3245676 (+) 510 WP_008784287.1 SOS-induced cell division inhibitor SulA -
  NFK62_RS16125 (NFK62_16115) ompA 3246034..3247080 (+) 1047 WP_063940603.1 porin OmpA -
  NFK62_RS16130 (NFK62_16120) matP 3247169..3247621 (-) 453 WP_003831992.1 macrodomain Ter protein MatP -
  NFK62_RS16135 (NFK62_16125) - 3247807..3249567 (+) 1761 WP_279274918.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.54 Da        Isoelectric Point: 8.6049

>NTDB_id=699048 NFK62_RS16115 WP_003831996.1 3244335..3244949(-) (sxy/tfoX) [Citrobacter portucalensis strain RHB40-E3-C01]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=699048 NFK62_RS16115 WP_003831996.1 3244335..3244949(-) (sxy/tfoX) [Citrobacter portucalensis strain RHB40-E3-C01]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCTAATGGTGAGCTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGCGGACGTCCTCTTGTACTTAAT
TATTATCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCTGCGGT
TAAGGAGAAACAAAGTCGCTTTGCCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACCCTGCTGA
ATGAAGCTGGAATTAAAGATGAGGGGACCATGCGATCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCACTCCCGGCGACGCG
TCGCCAGGAGCTGGTTGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5A9E513

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

67.647

100

0.676