Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   PCP14_RS10605 Genome accession   NZ_CP115251
Coordinates   2284568..2285593 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain F035     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2279568..2290593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP14_RS10580 (PCP14_10575) - 2279757..2280074 (-) 318 WP_003097288.1 tetratricopeptide repeat protein -
  PCP14_RS10585 (PCP14_10580) trkA 2280223..2281596 (-) 1374 WP_003097289.1 Trk system potassium transporter TrkA -
  PCP14_RS10590 (PCP14_10585) rsmB 2281623..2282927 (-) 1305 WP_024947200.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PCP14_RS10595 (PCP14_10590) fmt 2282924..2283868 (-) 945 WP_023095008.1 methionyl-tRNA formyltransferase -
  PCP14_RS10600 (PCP14_10595) def 2283923..2284429 (-) 507 WP_003107059.1 peptide deformylase -
  PCP14_RS10605 (PCP14_10600) tsaP 2284568..2285593 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PCP14_RS10610 (PCP14_10605) dprA 2285728..2286816 (+) 1089 WP_015502109.1 DNA-processing protein DprA Machinery gene
  PCP14_RS10615 (PCP14_10610) - 2286857..2287414 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  PCP14_RS10620 (PCP14_10615) - 2287424..2288401 (-) 978 WP_024947199.1 NADPH:quinone reductase -
  PCP14_RS10625 (PCP14_10620) hemF 2288592..2289509 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  PCP14_RS10630 (PCP14_10625) aroE 2289567..2290391 (+) 825 WP_003097314.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=699034 PCP14_RS10605 WP_003097294.1 2284568..2285593(+) (tsaP) [Pseudomonas aeruginosa strain F035]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=699034 PCP14_RS10605 WP_003097294.1 2284568..2285593(+) (tsaP) [Pseudomonas aeruginosa strain F035]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGCGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393