Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFK67_RS08395 Genome accession   NZ_CP099366
Coordinates   1784459..1785073 (+) Length   204 a.a.
NCBI ID   WP_016152483.1    Uniprot ID   R8X084
Organism   Citrobacter braakii strain RHB41-E2-C02     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1779459..1790073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFK67_RS08375 (NFK67_08370) - 1779820..1781580 (-) 1761 WP_279267572.1 Lon protease family protein -
  NFK67_RS08380 (NFK67_08375) matP 1781766..1782218 (+) 453 WP_016152480.1 macrodomain Ter protein MatP -
  NFK67_RS08385 (NFK67_08380) ompA 1782317..1783375 (-) 1059 WP_279267573.1 porin OmpA -
  NFK67_RS08390 (NFK67_08385) sulA 1783733..1784242 (-) 510 WP_032931135.1 SOS-induced cell division inhibitor SulA -
  NFK67_RS08395 (NFK67_08390) sxy/tfoX 1784459..1785073 (+) 615 WP_016152483.1 TfoX/Sxy family DNA transformation protein Regulator
  NFK67_RS08400 (NFK67_08395) yccS 1785051..1787204 (-) 2154 WP_016152484.1 YccS family putative transporter -
  NFK67_RS08405 (NFK67_08400) - 1787223..1787669 (-) 447 WP_016152485.1 YccF domain-containing protein -
  NFK67_RS08410 (NFK67_08405) helD 1787795..1789849 (+) 2055 WP_279267574.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.52 Da        Isoelectric Point: 8.6113

>NTDB_id=698993 NFK67_RS08395 WP_016152483.1 1784459..1785073(+) (sxy/tfoX) [Citrobacter braakii strain RHB41-E2-C02]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=698993 NFK67_RS08395 WP_016152483.1 1784459..1785073(+) (sxy/tfoX) [Citrobacter braakii strain RHB41-E2-C02]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTGTCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGTTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8X084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681