Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NFL11_RS23545 Genome accession   NZ_CP099364
Coordinates   4843111..4844631 (+) Length   506 a.a.
NCBI ID   WP_019078449.1    Uniprot ID   -
Organism   Citrobacter braakii strain RHB44-SE-C08     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4838111..4849631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFL11_RS23525 (NFL11_23515) - 4839666..4840595 (-) 930 WP_003829030.1 branched-chain amino acid transaminase -
  NFL11_RS23530 (NFL11_23520) ilvM 4840613..4840876 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  NFL11_RS23535 (NFL11_23525) ilvG 4840873..4842519 (-) 1647 WP_016157831.1 acetolactate synthase 2 catalytic subunit -
  NFL11_RS23540 (NFL11_23530) ilvL 4842659..4842757 (-) 99 WP_001311244.1 ilv operon leader peptide -
  NFL11_RS23545 (NFL11_23535) comM 4843111..4844631 (+) 1521 WP_019078449.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NFL11_RS23550 (NFL11_23540) maoP 4844657..4844995 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  NFL11_RS23555 (NFL11_23545) hdfR 4845102..4845947 (+) 846 WP_085951100.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55201.20 Da        Isoelectric Point: 7.3092

>NTDB_id=698986 NFL11_RS23545 WP_019078449.1 4843111..4844631(+) (comM) [Citrobacter braakii strain RHB44-SE-C08]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTPHNLDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIADHL
QTVCAFLEGKHDLDRPSSADFTPNALADDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLIHSDTIQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQNAMKG
ENSATVKQRVMAARERQYQRQNKLNAHLDSQDIHKYCLLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQCDHI
SRQHLQEAVGYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=698986 NFL11_RS23545 WP_019078449.1 4843111..4844631(+) (comM) [Citrobacter braakii strain RHB44-SE-C08]
ATGTCACTATCGATTGTTCACACACGCGCCGCGCTAGGCGTGAATGCGCCAGCCATTACCATCGAGGTACATATCAGCAA
CGGCCTGCCTGGTTTAACCATGGTGGGGCTGCCCGAAACGACGGTGAAAGAGGCTCGCGATCGGGTACGCAGTGCGATTA
TTAATAGCGGTTATGAATTCCCGGCAAAGAAGATAACTATAAACCTCGCTCCGGCCGATCTCCCGAAAGAAGGGGGGCGA
TATGATTTACCTATCGCTGTTGCGCTTCTGGCCGCTTCTGAGCAGCTTACACCCCACAATCTCGACACCTACGAGCTGGT
AGGTGAATTAGCGCTTACAGGCGCGCTACGCGGCGTTCCCGGCGCGATATCAAGCGCAACCGAGGCCATTCGTGCAGGCA
GGCGAATTATTGTCGCAAAAGAGAATGCCGCTGAAGTTGGACTGATACACGGCGAAGGGTGCCTGATCGCCGATCACCTG
CAGACCGTATGCGCATTTCTCGAAGGTAAGCATGATTTAGACAGGCCATCATCCGCAGATTTTACGCCTAACGCATTAGC
TGATGATCTGAGTGATGTTATCGGCCAGGAACAGGGTAAACGCGGGCTGGAGCTTACCGCAGCAGGCGGCCACAACCTCT
TGCTCATCGGCCCGCCGGGTACGGGAAAGACTATGCTAGCCAGTCGACTCAGAGGGCTACTCCCTCCACTTAGCAACGAT
GAAGCGCTGGAAAGTGCCGCGATACTCAGTCTGATCCATTCCGACACGATACAAAAACAGTGGAAGCAGCGCCCTTTTCG
CTCGCCACATCACAGTGCTTCATTAACCGCCATGGTCGGTGGAGGCTCTATTCCTGCGCCAGGAGAGATCTCTTTAGCGC
ACAACGGCATACTGTTTCTGGATGAACTACCCGAGTTTGAGCGGCGCACGCTGGATGCACTGCGCGAACCCATCGAGTCC
GGGCAGATCCATCTATCCCGCACCAGAGCAAAAATAACCTATCCCGCACGCTTTCAACTCATAGCTGCGATGAATCCAAG
CCCGACGGGCCATTATCAGGGGAACCATAACCGCTGTACCCCAGAACAGACGCTGCGCTACCTAAATCGATTGTCAGGTC
CATTTCTTGACCGCTTCGACCTCTCCCTCGAAATTCCCTTACCGCCGCCCGGTATACTCAGCCAGAACGCGATGAAAGGG
GAAAATAGCGCAACGGTGAAGCAACGTGTTATGGCAGCGCGAGAGCGTCAGTATCAGCGGCAAAATAAGTTAAACGCACA
TCTGGACAGTCAGGATATCCATAAATACTGCCTACTGCGTAGCGACGATGCACAGTGGCTTGAAGAAACGCTCGCGCATC
TCGGATTGTCTATCCGCGCCTGGCTGCGCCTGATTAAGGTCGCTCGAACGATTGCGGATATCGAACAATGTGATCACATC
TCTCGCCAGCATTTACAGGAGGCCGTTGGGTACCGAGCGATAGACAGGTTACTCATTCATCTGCAGAAATTACTGACATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Haemophilus influenzae Rd KW20

57.534

100

0.581
  comM Glaesserella parasuis strain SC1401

57.564

100

0.579
  comM Vibrio campbellii strain DS40M4

57.738

99.605

0.575
  comM Legionella pneumophila str. Paris

47.485

98.221

0.466
  comM Legionella pneumophila strain ERS1305867

47.485

98.221

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.857

99.605

0.427