Detailed information NTG0698986

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP83_RS29980
• Genome accession: NZ_CP115250
• Coordinates: 6448810..6449814 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F036
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 6443810..6454814

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP83_RS29965 (PCP83_29960)	-	6444293..6445300 (+)	1008	WP_003098486.1	TolB family protein	-
PCP83_RS29970 (PCP83_29965)	mutS	6445426..6447993 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PCP83_RS29975 (PCP83_29970)	fdxA	6448060..6448383 (+)	324	WP_003092272.1	ferredoxin FdxA	-
PCP83_RS29980 (PCP83_29975)	rpoS	6448810..6449814 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP83_RS29985 (PCP83_29980)	-	6449919..6450812 (-)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP83_RS29990 (PCP83_29985)	-	6450858..6451493 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP83_RS29995 (PCP83_29990)	surE	6451526..6452275 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP83_RS30000 (PCP83_29995)	truD	6452263..6453330 (-)	1068	WP_023115122.1	tRNA pseudouridine(13) synthase TruD	-
PCP83_RS30005 (PCP83_30000)	ispF	6453327..6453800 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP83_RS30010 (PCP83_30005)	fghA	6453871..6454722 (-)	852	WP_023115121.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=698986 PCP83_RS29980 WP_003113871.1 6448810..6449814(-) (rpoS) [Pseudomonas aeruginosa strain F036]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=698986 PCP83_RS29980 WP_003113871.1 6448810..6449814(-) (rpoS) [Pseudomonas aeruginosa strain F036]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653