Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFL11_RS15405 Genome accession   NZ_CP099364
Coordinates   3090087..3090701 (-) Length   204 a.a.
NCBI ID   WP_016152483.1    Uniprot ID   R8X084
Organism   Citrobacter braakii strain RHB44-SE-C08     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3085087..3095701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFL11_RS15390 (NFL11_15390) helD 3085311..3087365 (-) 2055 WP_019076416.1 DNA helicase IV -
  NFL11_RS15395 (NFL11_15395) - 3087491..3087937 (+) 447 WP_016152485.1 YccF domain-containing protein -
  NFL11_RS15400 (NFL11_15400) yccS 3087956..3090109 (+) 2154 WP_016152484.1 YccS family putative transporter -
  NFL11_RS15405 (NFL11_15405) sxy/tfoX 3090087..3090701 (-) 615 WP_016152483.1 TfoX/Sxy family DNA transformation protein Regulator
  NFL11_RS15410 (NFL11_15410) sulA 3090918..3091427 (+) 510 WP_019076414.1 SOS-induced cell division inhibitor SulA -
  NFL11_RS15415 (NFL11_15415) ompA 3091785..3092843 (+) 1059 WP_016156137.1 porin OmpA -
  NFL11_RS15420 (NFL11_15420) matP 3092942..3093394 (-) 453 WP_279268100.1 macrodomain Ter protein MatP -
  NFL11_RS15425 (NFL11_15425) - 3093580..3095340 (+) 1761 WP_016156136.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.52 Da        Isoelectric Point: 8.6113

>NTDB_id=698980 NFL11_RS15405 WP_016152483.1 3090087..3090701(-) (sxy/tfoX) [Citrobacter braakii strain RHB44-SE-C08]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=698980 NFL11_RS15405 WP_016152483.1 3090087..3090701(-) (sxy/tfoX) [Citrobacter braakii strain RHB44-SE-C08]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAAAACCAGCAGCAGTTAGTATCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGGGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8X084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681