Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFJ26_RS07815 Genome accession   NZ_CP099351
Coordinates   1716017..1716646 (+) Length   209 a.a.
NCBI ID   WP_000839163.1    Uniprot ID   A0A7L5X6V6
Organism   Escherichia marmotae strain RHB02-E4-C07     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1711017..1721646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFJ26_RS07795 (NFJ26_07750) - 1711407..1713167 (-) 1761 WP_000156540.1 Lon protease family protein -
  NFJ26_RS07800 (NFJ26_07755) matP 1713355..1713807 (+) 453 WP_001516131.1 macrodomain Ter protein MatP -
  NFJ26_RS07805 (NFJ26_07760) ompA 1713882..1714934 (-) 1053 WP_010376923.1 porin OmpA -
  NFJ26_RS07810 (NFJ26_07765) sulA 1715290..1715799 (-) 510 WP_000288698.1 SOS-induced cell division inhibitor SulA -
  NFJ26_RS07815 (NFJ26_07770) sxy/tfoX 1716017..1716646 (+) 630 WP_000839163.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NFJ26_RS07820 (NFJ26_07775) yccS 1716609..1718771 (-) 2163 WP_000875016.1 YccS family putative transporter -
  NFJ26_RS07825 (NFJ26_07780) - 1718781..1719227 (-) 447 WP_001261229.1 YccF domain-containing protein -
  NFJ26_RS07830 (NFJ26_07785) helD 1719350..1721404 (+) 2055 WP_010376931.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24174.11 Da        Isoelectric Point: 9.5571

>NTDB_id=698928 NFJ26_RS07815 WP_000839163.1 1716017..1716646(+) (sxy/tfoX) [Escherichia marmotae strain RHB02-E4-C07]
MKSLSYKRIYKSQKYLATLGTIEYRSLFGSYSLTVDDTVFAVVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRFVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKTTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSITPKQDFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=698928 NFJ26_RS07815 WP_000839163.1 1716017..1716646(+) (sxy/tfoX) [Escherichia marmotae strain RHB02-E4-C07]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAGAAATACCTGGCAACGTTAGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGTCTGACCGTTGACGACACGGTATTTGCGGTAGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGCGCACAATACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGTGGACGGTTCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTTTATGGCGAAATCAACTGAAGCTGGTACGTCTGTCAAAATATTCTCTCGACGCAGCGCT
TAAAGAGAAAACTACACGTAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAAGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCGAAAATGTGTTGGTTGCGGCTGCGGCAGCAAAAT
AGTCTGGTGACAGAAAAGATCTTGTTTATGCTTGAAGGCGCAATTATCGGTATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGATTCTATTACGCCAAAGCAGGATTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(15-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L5X6V6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

97.129

100

0.971