Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFK96_RS08425 Genome accession   NZ_CP099331
Coordinates   1781155..1781784 (+) Length   209 a.a.
NCBI ID   WP_000793790.1    Uniprot ID   A0A7L6ZPA1
Organism   Escherichia fergusonii strain RHB44-C03     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1776155..1786784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFK96_RS08405 (NFK96_08390) - 1776562..1778322 (-) 1761 WP_223684571.1 Lon protease family protein -
  NFK96_RS08410 (NFK96_08395) matP 1778507..1778962 (+) 456 WP_000877154.1 macrodomain Ter protein MatP -
  NFK96_RS08415 (NFK96_08400) ompA 1779017..1780072 (-) 1056 WP_024256413.1 porin OmpA -
  NFK96_RS08420 (NFK96_08405) sulA 1780429..1780938 (-) 510 WP_181674319.1 SOS-induced cell division inhibitor SulA -
  NFK96_RS08425 (NFK96_08410) sxy/tfoX 1781155..1781784 (+) 630 WP_000793790.1 TfoX/Sxy family DNA transformation protein Regulator
  NFK96_RS08430 (NFK96_08415) yccS 1781747..1783900 (-) 2154 WP_279284711.1 YccS family putative transporter -
  NFK96_RS08435 (NFK96_08420) - 1783920..1784366 (-) 447 WP_002431615.1 YccF domain-containing protein -
  NFK96_RS08440 (NFK96_08425) helD 1784489..1786543 (+) 2055 WP_253149170.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24359.36 Da        Isoelectric Point: 9.5059

>NTDB_id=698844 NFK96_RS08425 WP_000793790.1 1781155..1781784(+) (sxy/tfoX) [Escherichia fergusonii strain RHB44-C03]
MKNLSYDRIYKSQEYLASLGRVNYRSLFGSYSLTISDTVFAMVADGELYLRACEQSVQYCVKHTPRWLTFMKKGRLVMLN
YYRVDESLWQDQQQLIRLSRYSLDAALKEKKSLGRKYRLRDLPNITYHLESLLNEAGIKDVSTLRILGAKMCWLRLKQMN
QHITVKILYLLEGAVQDIHEAALPVVRRQELAVWVESLTPDLALLASFD

Nucleotide


Download         Length: 630 bp        

>NTDB_id=698844 NFK96_RS08425 WP_000793790.1 1781155..1781784(+) (sxy/tfoX) [Escherichia fergusonii strain RHB44-C03]
ATGAAAAATCTATCCTATGATCGGATCTATAAATCACAAGAATATTTAGCATCCCTGGGCAGGGTGAACTATCGGTCTCT
GTTTGGCAGTTACAGCTTAACTATCAGCGATACCGTGTTTGCGATGGTGGCTGATGGTGAGTTATATCTGCGCGCCTGTG
AACAAAGCGTCCAGTATTGCGTCAAACATACCCCCCGCTGGTTAACGTTTATGAAAAAAGGGCGGTTGGTCATGCTGAAC
TATTACCGGGTAGATGAAAGTTTGTGGCAGGACCAGCAGCAATTAATTCGCCTGTCGCGTTATTCGCTGGATGCAGCTCT
TAAAGAGAAGAAGAGCCTTGGCAGGAAGTATCGCTTAAGAGATCTGCCTAACATTACTTATCATCTTGAGTCGTTGCTCA
ATGAGGCGGGTATTAAAGATGTCAGCACGTTGCGTATTTTGGGGGCAAAAATGTGCTGGTTAAGGTTAAAGCAGATGAAT
CAGCACATTACCGTGAAAATACTCTATTTGCTGGAAGGCGCGGTGCAGGATATTCATGAAGCAGCGCTCCCGGTGGTCCG
TCGCCAGGAGCTTGCTGTATGGGTGGAGTCTCTTACGCCAGATCTGGCGTTGCTGGCGTCATTTGATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L6ZPA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.856

100

0.699