Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFL02_RS08595 Genome accession   NZ_CP099328
Coordinates   1819288..1819917 (+) Length   209 a.a.
NCBI ID   WP_279284369.1    Uniprot ID   -
Organism   Escherichia fergusonii strain RHB44-C21     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1814288..1824917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFL02_RS08575 (NFL02_08570) - 1814695..1816455 (-) 1761 WP_279284368.1 Lon protease family protein -
  NFL02_RS08580 (NFL02_08575) matP 1816640..1817095 (+) 456 WP_000877154.1 macrodomain Ter protein MatP -
  NFL02_RS08585 (NFL02_08580) ompA 1817150..1818205 (-) 1056 WP_024256413.1 porin OmpA -
  NFL02_RS08590 (NFL02_08585) sulA 1818562..1819071 (-) 510 WP_000288735.1 SOS-induced cell division inhibitor SulA -
  NFL02_RS08595 (NFL02_08590) sxy/tfoX 1819288..1819917 (+) 630 WP_279284369.1 TfoX/Sxy family DNA transformation protein Regulator
  NFL02_RS08600 (NFL02_08595) yccS 1819880..1822033 (-) 2154 WP_182258624.1 YccS family putative transporter -
  NFL02_RS08605 (NFL02_08600) - 1822053..1822499 (-) 447 WP_002431615.1 YccF domain-containing protein -
  NFL02_RS08610 (NFL02_08605) helD 1822622..1824676 (+) 2055 WP_279284370.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24359.36 Da        Isoelectric Point: 9.5059

>NTDB_id=698822 NFL02_RS08595 WP_279284369.1 1819288..1819917(+) (sxy/tfoX) [Escherichia fergusonii strain RHB44-C21]
MKNLSYDRIYKSQEYLASLGRVNYRSLFGSYSLTISDTVFAMVADGELYLRACEQSVQYCVKHTPRWLTFMKKGRLVMLN
YYRVDESLWQDQQQLIRLSRYSLDAALKEKKSLGRKYRLRDLPNITYHLESLLNEAGIKDVSTLRLLGAKMCWLRLKQMN
QHITVKILYLLEGAVQDIHEAALPVVRRQELAVWVESLTPDLALLASFD

Nucleotide


Download         Length: 630 bp        

>NTDB_id=698822 NFL02_RS08595 WP_279284369.1 1819288..1819917(+) (sxy/tfoX) [Escherichia fergusonii strain RHB44-C21]
ATGAAAAATCTATCCTATGATCGGATCTATAAATCACAAGAATATTTAGCATCCCTGGGCAGGGTGAACTATCGGTCTCT
GTTTGGCAGTTACAGCTTAACTATCAGCGATACCGTGTTTGCGATGGTGGCTGATGGTGAGTTATATCTGCGCGCCTGTG
AACAAAGCGTCCAGTATTGCGTCAAACATACCCCCCGCTGGTTAACGTTTATGAAAAAAGGGCGGTTGGTCATGCTGAAC
TATTACCGGGTAGATGAAAGTTTGTGGCAGGACCAGCAGCAATTAATTCGCCTGTCGCGTTATTCGCTGGATGCAGCTCT
TAAAGAGAAGAAGAGCCTTGGCAGGAAGTATCGCTTAAGAGATCTGCCTAACATTACTTATCATCTTGAGTCGTTGCTCA
ATGAGGCGGGTATTAAAGATGTCAGCACGTTGCGTCTTTTGGGGGCAAAAATGTGCTGGTTAAGGTTAAAGCAGATGAAT
CAGCACATTACCGTGAAAATACTCTATTTGCTGGAAGGCGCGGTGCAGGATATTCATGAAGCAGCGCTCCCGGTGGTCCG
TCGCCAGGAGCTTGCTGTATGGGTGGAGTCTCTTACGCCAGATCTGGCGTTGCTGGCGTCATTTGATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.378

100

0.694