Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFL62_RS07790 Genome accession   NZ_CP099327
Coordinates   1640218..1640844 (+) Length   208 a.a.
NCBI ID   WP_020884792.1    Uniprot ID   A0A839BJN6
Organism   Enterobacter ludwigii strain RHB47-SO-C03     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1635218..1645844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFL62_RS07770 (NFL62_07770) - 1635612..1637372 (-) 1761 WP_193162893.1 Lon protease family protein -
  NFL62_RS07775 (NFL62_07775) matP 1637559..1638011 (+) 453 WP_244047856.1 macrodomain Ter protein MatP -
  NFL62_RS07780 (NFL62_07780) ompA 1638081..1639136 (-) 1056 WP_020884794.1 porin OmpA -
  NFL62_RS07785 (NFL62_07785) sulA 1639491..1640000 (-) 510 WP_032677816.1 SOS-induced cell division inhibitor SulA -
  NFL62_RS07790 (NFL62_07790) sxy/tfoX 1640218..1640844 (+) 627 WP_020884792.1 TfoX/Sxy family DNA transformation protein Regulator
  NFL62_RS07795 (NFL62_07795) yccS 1640801..1642963 (-) 2163 WP_020884791.1 YccS family putative transporter -
  NFL62_RS07800 (NFL62_07800) - 1642983..1643429 (-) 447 WP_014169434.1 YccF domain-containing protein -
  NFL62_RS07805 (NFL62_07805) helD 1643553..1645607 (+) 2055 WP_279258157.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23864.38 Da        Isoelectric Point: 9.2489

>NTDB_id=698794 NFL62_RS07790 WP_020884792.1 1640218..1640844(+) (sxy/tfoX) [Enterobacter ludwigii strain RHB47-SO-C03]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERSQRDRRNRLKDLPNLTFQLEVLLFEAGITDEETLRELGARASWLKMRAKN
KALSIKVLFALEGAIAGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=698794 NFL62_RS07790 WP_020884792.1 1640218..1640844(+) (sxy/tfoX) [Enterobacter ludwigii strain RHB47-SO-C03]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTTTCACCCTTAGGTGAAATCCACCATCGTGCGCT
GTTCGGGGGGTATACCCTGGCCGTAGATGATGCCGTCTTCGCTATGGTCTCCGATGGGGAACTGTATCTCCGGGCCTGTG
AGGAAAGTGCAAAATACTGTGTAAAAAATGCCTCGTCATTCTTAACCCTCATGAAACGGGGTCGTCCGGTGCTGCTCAAT
TATTATCGTGTCGATGACGGACTGTGGCAGGACAGAGAACGGCTGCTTCAGCTCTCCTCGTTCGCGCTCAATGCGGCACG
AAAAGAGCGTTCGCAGCGTGATCGGCGAAACCGCCTCAAGGACTTGCCCAATCTCACCTTTCAGCTTGAAGTGCTGCTCT
TTGAAGCCGGAATCACTGATGAAGAGACGCTGCGGGAGCTGGGTGCCCGTGCGAGCTGGCTGAAGATGCGGGCGAAGAAT
AAAGCGCTCAGCATTAAAGTGCTCTTCGCGTTGGAAGGGGCCATCGCCGGACTTCATGAAGCGGCACTCCCGGCGGGAAT
TCGCCGGGAGTTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A839BJN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.113

97.596

0.577