Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFL61_RS07935 Genome accession   NZ_CP099325
Coordinates   1675111..1675737 (+) Length   208 a.a.
NCBI ID   WP_279259098.1    Uniprot ID   -
Organism   Enterobacter ludwigii strain RHB47-SO-C01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1670111..1680737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFL61_RS07915 (NFL61_07910) - 1670505..1672265 (-) 1761 WP_193162893.1 Lon protease family protein -
  NFL61_RS07920 (NFL61_07915) matP 1672452..1672904 (+) 453 WP_014169429.1 macrodomain Ter protein MatP -
  NFL61_RS07925 (NFL61_07920) ompA 1672974..1674029 (-) 1056 WP_020884794.1 porin OmpA -
  NFL61_RS07930 (NFL61_07925) sulA 1674384..1674893 (-) 510 WP_032677816.1 SOS-induced cell division inhibitor SulA -
  NFL61_RS07935 (NFL61_07930) sxy/tfoX 1675111..1675737 (+) 627 WP_279259098.1 TfoX/Sxy family DNA transformation protein Regulator
  NFL61_RS07940 (NFL61_07935) yccS 1675694..1677856 (-) 2163 WP_020884791.1 YccS family putative transporter -
  NFL61_RS07945 (NFL61_07940) - 1677876..1678322 (-) 447 WP_025204535.1 YccF domain-containing protein -
  NFL61_RS07950 (NFL61_07945) helD 1678446..1680500 (+) 2055 WP_020884789.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23848.38 Da        Isoelectric Point: 9.2489

>NTDB_id=698771 NFL61_RS07935 WP_279259098.1 1675111..1675737(+) (sxy/tfoX) [Enterobacter ludwigii strain RHB47-SO-C01]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERSQRDRRNRLKDLPNLTFQLEVLLFEAGITDEETLRELGARASWLKMRAKN
KALSIKVLFALEGAIAGLHEAALPAGIRRELTEWFNALPEPQENHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=698771 NFL61_RS07935 WP_279259098.1 1675111..1675737(+) (sxy/tfoX) [Enterobacter ludwigii strain RHB47-SO-C01]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTTTCACCCTTAGGTGAAATCCACCATCGTGCGCT
GTTCGGGGGGTATACCCTGGCCGTAGATGATGCCGTCTTCGCTATGGTCTCCGATGGGGAACTGTATCTCCGGGCCTGTG
AGGAAAGTGCAAAATACTGTGTAAAAAATGCCTCGTCATTTTTAACCCTGATGAAACGGGGTCGTCCGGTGCTGCTCAAT
TATTATCGTGTCGATGACGGACTGTGGCAGGACAGAGAACGGCTGCTTCAGCTCTCCTCGTTCGCGCTCAATGCGGCACG
AAAAGAGCGTTCGCAGCGTGATCGGCGAAACCGCCTCAAGGACTTGCCCAATCTCACCTTTCAGCTTGAAGTGCTGCTCT
TTGAAGCCGGAATCACTGATGAAGAGACGCTGCGGGAGCTGGGTGCCCGTGCGAGCTGGCTGAAGATGCGGGCGAAGAAT
AAAGCGCTCAGCATTAAAGTGCTCTTCGCGCTGGAAGGGGCCATCGCCGGACTTCATGAGGCAGCACTCCCGGCGGGAAT
TCGCCGGGAGTTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.113

97.596

0.577