Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFL35_RS08095 Genome accession   NZ_CP099318
Coordinates   1708976..1709602 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei strain RHB45-SO-C02     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1703976..1714602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFL35_RS08075 (NFL35_08070) - 1704375..1706135 (-) 1761 WP_039271166.1 Lon protease family protein -
  NFL35_RS08080 (NFL35_08075) matP 1706322..1706774 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  NFL35_RS08085 (NFL35_08080) ompA 1706840..1707892 (-) 1053 WP_108376575.1 porin OmpA -
  NFL35_RS08090 (NFL35_08085) sulA 1708249..1708758 (-) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  NFL35_RS08095 (NFL35_08090) sxy/tfoX 1708976..1709602 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  NFL35_RS08100 (NFL35_08095) yccS 1709559..1711721 (-) 2163 WP_015570895.1 YccS family putative transporter -
  NFL35_RS08105 (NFL35_08100) - 1711740..1712186 (-) 447 WP_003858149.1 YccF domain-containing protein -
  NFL35_RS08110 (NFL35_08105) helD 1712309..1714363 (+) 2055 WP_039271162.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=698727 NFL35_RS08095 WP_017384804.1 1708976..1709602(+) (sxy/tfoX) [Enterobacter hormaechei strain RHB45-SO-C02]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=698727 NFL35_RS08095 WP_017384804.1 1708976..1709602(+) (sxy/tfoX) [Enterobacter hormaechei strain RHB45-SO-C02]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGTCATCAGCGTAATCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572