Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFL06_RS07815 Genome accession   NZ_CP099316
Coordinates   1670730..1671356 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei strain RHB44-SE-C02     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1665730..1676356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFL06_RS07795 (NFL06_07790) - 1666129..1667889 (-) 1761 WP_017384808.1 Lon protease family protein -
  NFL06_RS07800 (NFL06_07795) matP 1668076..1668528 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  NFL06_RS07805 (NFL06_07800) ompA 1668594..1669646 (-) 1053 WP_017694761.1 porin OmpA -
  NFL06_RS07810 (NFL06_07805) sulA 1670003..1670512 (-) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  NFL06_RS07815 (NFL06_07810) sxy/tfoX 1670730..1671356 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  NFL06_RS07820 (NFL06_07815) yccS 1671313..1673475 (-) 2163 WP_015570895.1 YccS family putative transporter -
  NFL06_RS07825 (NFL06_07820) - 1673494..1673940 (-) 447 WP_003858149.1 YccF domain-containing protein -
  NFL06_RS07830 (NFL06_07825) helD 1674063..1676117 (+) 2055 WP_045344708.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=698705 NFL06_RS07815 WP_017384804.1 1670730..1671356(+) (sxy/tfoX) [Enterobacter hormaechei strain RHB44-SE-C02]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=698705 NFL06_RS07815 WP_017384804.1 1670730..1671356(+) (sxy/tfoX) [Enterobacter hormaechei strain RHB44-SE-C02]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAGGATCTGCCGAATCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTACCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572