Detailed information NTG0698695

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP48_RS07100
• Genome accession: NZ_CP115248
• Coordinates: 1477250..1478254 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F038
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1472250..1483254

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP48_RS07070 (PCP48_07070)	fghA	1472342..1473193 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PCP48_RS07075 (PCP48_07075)	ispF	1473264..1473737 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP48_RS07080 (PCP48_07080)	truD	1473734..1474801 (+)	1068	WP_012613728.1	tRNA pseudouridine(13) synthase TruD	-
PCP48_RS07085 (PCP48_07085)	surE	1474789..1475538 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP48_RS07090 (PCP48_07090)	-	1475571..1476206 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP48_RS07095 (PCP48_07095)	-	1476252..1477145 (+)	894	WP_023089397.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP48_RS07100 (PCP48_07100)	rpoS	1477250..1478254 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP48_RS07105 (PCP48_07105)	fdxA	1478681..1479004 (-)	324	WP_003119354.1	ferredoxin FdxA	-
PCP48_RS07110 (PCP48_07110)	mutS	1479071..1481638 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PCP48_RS07115 (PCP48_07115)	-	1481764..1482771 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=698695 PCP48_RS07100 WP_003113871.1 1477250..1478254(+) (rpoS) [Pseudomonas aeruginosa strain F038]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=698695 PCP48_RS07100 WP_003113871.1 1477250..1478254(+) (rpoS) [Pseudomonas aeruginosa strain F038]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653