Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DN611_RS11110 Genome accession   NZ_AP018532
Coordinates   2243527..2245326 (+) Length   599 a.a.
NCBI ID   WP_302495566.1    Uniprot ID   -
Organism   Oscillibacter sp. PEA192     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2238527..2250326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN611_RS11090 - 2239105..2240013 (+) 909 WP_025544191.1 LysR family transcriptional regulator -
  DN611_RS11095 - 2240791..2241420 (+) 630 WP_021751507.1 TetR/AcrR family transcriptional regulator -
  DN611_RS11105 rcrP 2241753..2243513 (+) 1761 WP_119311355.1 ABC transporter ATP-binding protein Regulator
  DN611_RS11110 rcrQ 2243527..2245326 (+) 1800 WP_302495566.1 ABC transporter ATP-binding protein Regulator
  DN611_RS11115 - 2245554..2247707 (-) 2154 WP_119311932.1 UvrD-helicase domain-containing protein -
  DN611_RS11120 - 2248348..2249952 (-) 1605 WP_119311356.1 ATP-binding protein -
  DN611_RS11125 - 2250024..2250230 (-) 207 WP_119311357.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 66050.41 Da        Isoelectric Point: 5.9231

>NTDB_id=69869 DN611_RS11110 WP_302495566.1 2243527..2245326(+) (rcrQ) [Oscillibacter sp. PEA192]
MPKMMQNRMCAPGKSRRGIGGVLRELFTYSNKLKVPSVAAFCFAVAGAVLTIIGPSLLSRITDLISDALDGEIDLAAIGR
TGVILLVIYGFSAVFTYVEHFIMATVTLELSRDMRQDLSRKINRVPMSYFSKVSYGDILSRITNDVSTLQQALANSLPSM
ISAVAQFLGCLVMMFVTEWRMALAAIAVTALGFLIMAAVMLRSQKYFTARQENLSTLNGYIEEMYSGHDVVRLSRANEQV
KETFGGMNAVLYDAEWRSQFLSGIMQPLMTIIGNLGYVAVCVLGSALAMSGEISFGVIVAFILYVRLFTSPLSTLAQGMT
QMQTAAAAGDHVFDFLHEKELPDETGKRPELSPVQGEVEFEHVRFSYPNHPDKIIIKDFSAHIQPGQKVAIVGPTGAGKT
TMVNLLMRFFEINSGNIKIDGVPTSEMTREGVHDLFSMVLQDTWLFEGTVRENLVYNKTGVTDQQLEEACRACGIYHFIE
TLPHGFDTVLDDSIAISSGQKQLLTIARAMIQGNPMLILDEATSSVDTRTELITQQAMDRLTEHRTSFVIAHRLSTIKNA
DLILVLKDGDIIEQGTHKELLAKGGFYADLYNSQFEKAS

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=69869 DN611_RS11110 WP_302495566.1 2243527..2245326(+) (rcrQ) [Oscillibacter sp. PEA192]
ATGCCAAAGATGATGCAGAACAGAATGTGCGCGCCGGGAAAGAGCAGGCGCGGCATCGGCGGTGTGCTCAGAGAACTGTT
CACCTATTCCAACAAATTGAAAGTGCCCTCTGTTGCGGCCTTTTGCTTCGCCGTGGCCGGCGCAGTGCTGACCATCATCG
GCCCCAGCCTGCTCAGTCGGATCACGGACCTCATCTCCGACGCCCTGGACGGGGAGATCGATCTGGCCGCCATCGGCCGC
ACCGGCGTAATCCTGCTGGTGATCTACGGCTTCAGTGCCGTCTTTACCTATGTGGAGCACTTCATCATGGCTACGGTCAC
CCTGGAGCTGTCCCGGGATATGCGGCAGGACCTGTCCCGAAAAATCAACCGGGTGCCCATGAGCTACTTCAGCAAGGTGT
CTTATGGTGACATCCTCAGCCGCATCACCAACGACGTAAGTACTCTGCAGCAGGCCCTGGCCAACAGCCTGCCCTCCATG
ATCAGCGCAGTGGCCCAATTCCTCGGCTGTCTGGTGATGATGTTTGTCACTGAGTGGCGTATGGCGCTGGCAGCCATTGC
CGTCACGGCACTGGGCTTCCTCATCATGGCTGCGGTGATGCTCCGGTCCCAGAAGTACTTCACCGCCCGGCAGGAGAACC
TGAGCACCCTGAACGGCTATATTGAGGAGATGTACTCCGGCCACGACGTGGTGCGCCTCTCCCGGGCCAACGAGCAGGTA
AAAGAGACCTTCGGCGGGATGAATGCCGTTCTGTACGACGCAGAGTGGCGCAGCCAGTTCCTCTCCGGCATCATGCAGCC
CCTGATGACTATCATCGGCAACCTGGGCTATGTGGCGGTCTGCGTCCTGGGTTCCGCCCTGGCCATGAGCGGAGAGATCT
CCTTCGGCGTCATTGTTGCGTTCATCCTCTATGTGCGGCTGTTCACCTCTCCCCTGAGCACCCTGGCCCAGGGCATGACC
CAGATGCAGACGGCGGCAGCCGCCGGCGACCACGTCTTCGACTTTCTCCACGAGAAAGAGCTGCCCGATGAGACCGGCAA
GCGCCCCGAACTCTCTCCTGTGCAGGGCGAAGTCGAATTTGAACACGTCCGATTCAGCTATCCGAATCATCCGGATAAGA
TCATCATCAAGGACTTCTCTGCCCATATTCAGCCGGGGCAGAAGGTGGCTATTGTGGGTCCCACCGGAGCGGGCAAGACC
ACGATGGTCAATCTGCTGATGCGCTTCTTTGAGATCAACAGCGGAAACATCAAAATCGACGGCGTGCCCACCTCTGAAAT
GACCCGGGAGGGCGTCCACGACCTGTTCAGCATGGTACTCCAGGACACCTGGCTGTTTGAGGGGACTGTCCGGGAAAATC
TGGTCTACAACAAGACCGGGGTCACGGACCAGCAGCTGGAGGAGGCCTGCCGGGCCTGCGGCATCTATCACTTCATCGAA
ACCCTGCCCCACGGCTTTGATACCGTGCTGGATGACAGCATTGCCATTTCCTCCGGGCAGAAGCAGCTGCTCACCATCGC
CCGGGCCATGATTCAGGGCAATCCCATGCTGATTCTGGACGAGGCCACCTCCTCGGTGGATACCCGCACAGAGCTCATCA
CCCAGCAGGCCATGGACCGGCTGACGGAGCACCGCACCAGCTTTGTCATCGCCCACCGGCTGTCCACCATCAAAAACGCC
GACCTGATTCTGGTGCTGAAGGACGGCGATATCATCGAGCAAGGCACGCACAAGGAACTCCTGGCCAAAGGCGGCTTCTA
CGCTGACCTGTACAACAGCCAGTTTGAAAAGGCCTCGTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(39-312)

ABC transporter (ABC_tran)

(377-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.777

92.821

0.499

Multiple sequence alignment