Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DN611_RS11105 Genome accession   NZ_AP018532
Coordinates   2241753..2243513 (+) Length   586 a.a.
NCBI ID   WP_119311355.1    Uniprot ID   -
Organism   Oscillibacter sp. PEA192     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2236753..2248513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN611_RS11085 - 2238018..2238866 (-) 849 WP_051320032.1 hypothetical protein -
  DN611_RS11090 - 2239105..2240013 (+) 909 WP_025544191.1 LysR family transcriptional regulator -
  DN611_RS11095 - 2240791..2241420 (+) 630 WP_021751507.1 TetR/AcrR family transcriptional regulator -
  DN611_RS11105 rcrP 2241753..2243513 (+) 1761 WP_119311355.1 ABC transporter ATP-binding protein Regulator
  DN611_RS11110 rcrQ 2243527..2245326 (+) 1800 WP_302495566.1 ABC transporter ATP-binding protein Regulator
  DN611_RS11115 - 2245554..2247707 (-) 2154 WP_119311932.1 UvrD-helicase domain-containing protein -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64230.61 Da        Isoelectric Point: 6.9033

>NTDB_id=69868 DN611_RS11105 WP_119311355.1 2241753..2243513(+) (rcrP) [Oscillibacter sp. PEA192]
MLKLLRNLRRQEWAMAAVCAVLILGQIYFDLALPDYMSSLTVLIKTPGSTLSDILHTGLEMLGCTLASAVLCVICGYLTA
KVAAGFSFSIREAVFHKIADFGQQEMMTFSVPSLINRTTNDITQVQMLTAMGLQILIKSPVMAVWAIIKIVGKSWTLSAI
TAGFVAALLVMMAVIIGVVVPRFRRVQKLTDHINLVARENLNGINVVHAYNAEDYQNAKFWKGNEELMRTQLFNQRAFAF
LMPGVTLAMNALSLVIYWVGASIVNAVPAADTAARLAAFSDIVVFGTYATYVIMSIMMMVMIIMMLPAAQVSAQRINEVL
ETRNSLTQGARIDALETGTVEFRDVSFHYPSSDKNVLEHITFQAKRGETVAFIGATGSGKTTLVSLAARFYDATEGTVLV
DGVDVRDYTFDALYDRIGYVTQKAILFSGDVRGNVLFGASRGKDSDADVQKALELAQASEFVDRMPGGIHAPIAEGGTNV
SGGQKQRLSIARALARRPEILVFDDSFSALDYRTDTRLRAGLDRELKDTTRLIVAQRIGTIRNADKIIVLDEGRMVGMGT
HEELMQTCPIYQEIARSQLSQEELGA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=69868 DN611_RS11105 WP_119311355.1 2241753..2243513(+) (rcrP) [Oscillibacter sp. PEA192]
ATGCTGAAATTACTTCGTAACCTACGGCGGCAGGAGTGGGCCATGGCCGCCGTGTGCGCAGTGCTCATCCTGGGGCAGAT
TTATTTCGATCTGGCGCTGCCCGACTACATGAGCAGCCTGACCGTTCTGATTAAAACGCCGGGGAGCACCCTGTCGGACA
TCCTGCATACCGGCCTGGAAATGCTGGGCTGCACCCTGGCCAGCGCGGTGCTGTGCGTCATCTGCGGCTATCTGACCGCC
AAGGTGGCTGCCGGGTTCAGCTTTTCCATCCGGGAAGCGGTGTTTCATAAGATCGCAGACTTCGGCCAGCAGGAGATGAT
GACCTTCTCCGTCCCCAGCCTCATCAACCGCACCACCAACGACATCACCCAGGTGCAGATGCTGACGGCCATGGGCCTGC
AGATCCTAATCAAGTCCCCCGTCATGGCAGTGTGGGCCATCATCAAAATCGTGGGCAAGAGTTGGACCCTCTCCGCTATC
ACCGCCGGATTTGTGGCCGCCCTGCTGGTGATGATGGCGGTCATCATCGGCGTGGTGGTGCCCCGGTTCCGCCGGGTGCA
AAAGCTCACCGACCATATCAACCTGGTGGCCCGGGAGAACTTGAACGGTATCAATGTTGTCCACGCCTACAACGCTGAGG
ACTACCAGAACGCCAAGTTCTGGAAGGGCAACGAGGAACTGATGCGCACGCAGTTGTTCAACCAGCGGGCCTTTGCCTTC
CTGATGCCCGGCGTCACCCTGGCCATGAACGCATTGTCTCTGGTGATCTACTGGGTGGGTGCCTCCATCGTGAACGCCGT
CCCTGCCGCGGACACCGCCGCACGGCTGGCCGCCTTCAGCGACATCGTGGTGTTCGGCACCTACGCCACCTACGTCATCA
TGTCTATTATGATGATGGTCATGATTATCATGATGCTCCCGGCGGCCCAGGTGTCCGCCCAGCGGATCAATGAGGTGTTG
GAGACCCGGAACAGCCTGACTCAGGGCGCCCGCATCGATGCCCTGGAAACCGGTACTGTGGAGTTCCGGGACGTCTCCTT
CCACTATCCCTCCTCGGACAAGAATGTCCTGGAGCACATCACCTTCCAGGCCAAGCGGGGGGAGACCGTGGCCTTTATCG
GCGCCACCGGCAGCGGCAAGACCACTCTGGTCAGCCTGGCCGCCCGGTTCTATGATGCCACGGAGGGCACTGTGCTGGTG
GACGGGGTGGACGTTCGGGACTACACCTTCGACGCCCTGTATGACCGCATCGGCTATGTAACTCAGAAGGCCATCCTGTT
CTCCGGAGACGTCCGCGGCAACGTGCTGTTCGGCGCCAGCCGGGGCAAGGATTCCGATGCGGACGTTCAAAAGGCTCTGG
AGCTGGCCCAGGCCAGCGAGTTTGTGGACAGGATGCCCGGAGGCATCCATGCCCCCATCGCCGAGGGAGGCACCAACGTA
TCCGGCGGCCAGAAGCAGCGGCTCTCCATCGCCCGGGCCCTGGCGAGGCGCCCGGAGATCCTGGTGTTCGACGACTCCTT
CTCCGCCCTGGACTACCGGACGGATACCAGGCTCCGTGCCGGCCTGGACCGGGAGCTGAAGGATACCACTCGACTGATCG
TGGCTCAACGGATCGGCACCATCCGGAACGCGGACAAGATCATCGTTCTGGACGAGGGGAGGATGGTGGGGATGGGTACC
CACGAGGAACTGATGCAAACCTGCCCGATCTACCAGGAGATCGCCCGGTCCCAGCTCTCCCAGGAAGAGCTGGGGGCTTA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-506)

ABC transporter transmembrane region (ABC_membrane)

(25-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.495

100

0.495

Multiple sequence alignment