Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFK84_RS07655 Genome accession   NZ_CP099311
Coordinates   1641303..1641929 (+) Length   208 a.a.
NCBI ID   WP_032677817.1    Uniprot ID   -
Organism   Enterobacter ludwigii strain RHB43-SE-C05     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1636303..1646929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFK84_RS07635 (NFK84_07630) - 1636697..1638457 (-) 1761 WP_063925136.1 Lon protease family protein -
  NFK84_RS07640 (NFK84_07635) matP 1638644..1639096 (+) 453 WP_014169429.1 macrodomain Ter protein MatP -
  NFK84_RS07645 (NFK84_07640) ompA 1639166..1640221 (-) 1056 WP_020884794.1 porin OmpA -
  NFK84_RS07650 (NFK84_07645) sulA 1640576..1641085 (-) 510 WP_025204536.1 SOS-induced cell division inhibitor SulA -
  NFK84_RS07655 (NFK84_07650) sxy/tfoX 1641303..1641929 (+) 627 WP_032677817.1 TfoX/Sxy family DNA transformation protein Regulator
  NFK84_RS07660 (NFK84_07655) yccS 1641886..1644048 (-) 2163 WP_020884791.1 YccS family putative transporter -
  NFK84_RS07665 (NFK84_07660) - 1644068..1644514 (-) 447 WP_025204535.1 YccF domain-containing protein -
  NFK84_RS07670 (NFK84_07665) helD 1644638..1646692 (+) 2055 WP_279262042.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23863.40 Da        Isoelectric Point: 9.4993

>NTDB_id=698659 NFK84_RS07655 WP_032677817.1 1641303..1641929(+) (sxy/tfoX) [Enterobacter ludwigii strain RHB43-SE-C05]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERSQRDRRNRLKDLPNLTFQLEVLLFEAGITNEETLRELGARASWLKMRAKN
KALSIKVLFALEGAIAGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=698659 NFK84_RS07655 WP_032677817.1 1641303..1641929(+) (sxy/tfoX) [Enterobacter ludwigii strain RHB43-SE-C05]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTTTCACCCTTAGGTGAAATCCACCATCGTGCGCT
GTTCGGTGGGTATACCCTGGCCGTAGATGATGCCGTCTTCGCTATGGTCTCCGACGGGGAGCTGTATCTCCGGGCCTGTG
AGGAAAGTGCAAAATACTGTGTAAAAAATGCCTCATCATTCTTAACCCTGATGAAACGGGGTCGTCCGGTGCTGCTCAAT
TATTATCGTGTCGATGACGGACTGTGGCAGGACAGAGAACGGCTGCTTCAGCTCTCCTCGTTCGCGCTCAATGCGGCACG
AAAAGAGCGTTCGCAGCGTGATCGGCGAAACCGCCTCAAGGACTTGCCCAATCTCACCTTTCAGCTTGAAGTGCTGCTCT
TTGAAGCCGGAATCACTAATGAAGAGACGCTGCGGGAGCTGGGTGCCCGTGCGAGCTGGCTAAAGATGCGGGCGAAAAAT
AAAGCGCTCAGCATTAAAGTGCTGTTCGCGCTGGAAGGGGCCATCGCCGGACTTCATGAGGCGGCACTCCCGGCGGGAAT
TCGCCGGGAGTTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.621

97.596

0.572