Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFK33_RS07585 Genome accession   NZ_CP099310
Coordinates   1618310..1618936 (+) Length   208 a.a.
NCBI ID   WP_020884792.1    Uniprot ID   A0A839BJN6
Organism   Enterobacter ludwigii strain RHB28-E3-C01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1613310..1623936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFK33_RS07565 (NFK33_07560) - 1613704..1615464 (-) 1761 WP_025204537.1 Lon protease family protein -
  NFK33_RS07570 (NFK33_07565) matP 1615651..1616103 (+) 453 WP_014169429.1 macrodomain Ter protein MatP -
  NFK33_RS07575 (NFK33_07570) ompA 1616173..1617228 (-) 1056 WP_020884794.1 porin OmpA -
  NFK33_RS07580 (NFK33_07575) sulA 1617583..1618092 (-) 510 WP_279256945.1 SOS-induced cell division inhibitor SulA -
  NFK33_RS07585 (NFK33_07580) sxy/tfoX 1618310..1618936 (+) 627 WP_020884792.1 TfoX/Sxy family DNA transformation protein Regulator
  NFK33_RS07590 (NFK33_07585) yccS 1618893..1621055 (-) 2163 WP_279256792.1 YccS family putative transporter -
  NFK33_RS07595 (NFK33_07590) - 1621075..1621521 (-) 447 WP_025204535.1 YccF domain-containing protein -
  NFK33_RS07600 (NFK33_07595) helD 1621644..1623698 (+) 2055 WP_279256793.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23864.38 Da        Isoelectric Point: 9.2489

>NTDB_id=698636 NFK33_RS07585 WP_020884792.1 1618310..1618936(+) (sxy/tfoX) [Enterobacter ludwigii strain RHB28-E3-C01]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERSQRDRRNRLKDLPNLTFQLEVLLFEAGITDEETLRELGARASWLKMRAKN
KALSIKVLFALEGAIAGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=698636 NFK33_RS07585 WP_020884792.1 1618310..1618936(+) (sxy/tfoX) [Enterobacter ludwigii strain RHB28-E3-C01]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTTTCACCCTTAGGTGAAATCCACCATCGTGCGCT
GTTCGGGGGGTATACCCTGGCCGTAGATGATGCCGTCTTCGCTATGGTCTCCGACGGGGAACTGTATCTCCGGGCCTGTG
AGGAAAGTGCAAAATACTGTGTAAAAAATGCCTCGTCATTCTTAACCCTCATGAAACGGGGTCGTCCGGTGCTGCTCAAT
TATTATCGTGTCGATGACGGACTGTGGCAGGACAGAGAACGGCTGCTTCAGCTCTCCTCGTTCGCGCTCAATGCGGCACG
AAAAGAGCGTTCGCAGCGTGATCGGCGAAACCGCCTCAAGGACTTGCCCAATCTCACCTTTCAGCTTGAAGTGCTGCTCT
TTGAAGCCGGAATCACTGATGAAGAGACGCTGCGGGAGCTGGGTGCCCGTGCGAGCTGGCTAAAGATGCGGGCGAAAAAT
AAAGCGCTCAGCATTAAAGTGCTCTTCGCACTGGAAGGGGCCATCGCCGGACTTCATGAGGCGGCACTCCCGGCGGGAAT
TCGCCGGGAGTTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A839BJN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.113

97.596

0.577