Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFK08_RS07750 Genome accession   NZ_CP099308
Coordinates   1643156..1643782 (+) Length   208 a.a.
NCBI ID   WP_008499926.1    Uniprot ID   A0AAX1WHW5
Organism   Enterobacter roggenkampii strain RHB21-E1-C01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1638156..1648782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFK08_RS07730 (NFK08_07725) - 1638555..1640315 (-) 1761 WP_023343697.1 Lon protease family protein -
  NFK08_RS07735 (NFK08_07730) matP 1640502..1640954 (+) 453 WP_008499929.1 macrodomain Ter protein MatP -
  NFK08_RS07740 (NFK08_07735) ompA 1641019..1642074 (-) 1056 WP_023292865.1 porin OmpA -
  NFK08_RS07745 (NFK08_07740) sulA 1642429..1642938 (-) 510 WP_032637628.1 SOS-induced cell division inhibitor SulA -
  NFK08_RS07750 (NFK08_07745) sxy/tfoX 1643156..1643782 (+) 627 WP_008499926.1 TfoX/Sxy family DNA transformation protein Regulator
  NFK08_RS07755 (NFK08_07750) yccS 1643739..1645901 (-) 2163 WP_126287645.1 YccS family putative transporter -
  NFK08_RS07760 (NFK08_07755) - 1645921..1646367 (-) 447 WP_008499924.1 YccF domain-containing protein -
  NFK08_RS07765 (NFK08_07760) helD 1646491..1648545 (+) 2055 WP_069598088.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23885.49 Da        Isoelectric Point: 9.6439

>NTDB_id=698592 NFK08_RS07750 WP_008499926.1 1643156..1643782(+) (sxy/tfoX) [Enterobacter roggenkampii strain RHB21-E1-C01]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRTRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQESRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=698592 NFK08_RS07750 WP_008499926.1 1643156..1643782(+) (sxy/tfoX) [Enterobacter roggenkampii strain RHB21-E1-C01]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGCGGTTACACCCTGGCAGTGGATGATGCGGTCTTTGCCATGGTGTCCGATGGCGAACTTTACCTTCGCGCGTGTG
AAGAGAGTGCAAAATACTGTGTAAAAAATGCTTCCTCCTTCTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCACTCAGTGCGGCAAG
GAAAGAGCGCTACCAGCGTCATCAACGAACCCGTCTTAAGGATCTGCCGAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
TTGAAGCCGGTATCACCAATGAAGAAACGCTGCGGGCGCTGGGCGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAGAAT
AAAGCACTCAGTATAAAAGTGCTCTTTGCGCTGGAAGGGGCTATCGAAGGGCTGCATGAGGCGGCACTCCCGGCAGGTAT
CCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCGCAGGAGAGTCGTTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567