Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFJ16_RS14440 Genome accession   NZ_CP099303
Coordinates   2981596..2982210 (-) Length   204 a.a.
NCBI ID   WP_032936287.1    Uniprot ID   A0A0J1N982
Organism   Citrobacter freundii strain RHB02-E1-C01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2976596..2987210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFJ16_RS14425 (NFJ16_14400) helD 2976820..2978874 (-) 2055 WP_032936286.1 DNA helicase IV -
  NFJ16_RS14430 (NFJ16_14405) - 2979000..2979446 (+) 447 WP_003035892.1 YccF domain-containing protein -
  NFJ16_RS14435 (NFJ16_14410) yccS 2979465..2981618 (+) 2154 WP_032936477.1 YccS family putative transporter -
  NFJ16_RS14440 (NFJ16_14415) sxy/tfoX 2981596..2982210 (-) 615 WP_032936287.1 TfoX/Sxy family DNA transformation protein Regulator
  NFJ16_RS14445 (NFJ16_14420) sulA 2982428..2982937 (+) 510 WP_003035886.1 SOS-induced cell division inhibitor SulA -
  NFJ16_RS14450 (NFJ16_14425) ompA 2983295..2984353 (+) 1059 WP_003836839.1 porin OmpA -
  NFJ16_RS14455 (NFJ16_14430) matP 2984445..2984897 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  NFJ16_RS14460 (NFJ16_14435) - 2985083..2986843 (+) 1761 WP_048216643.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23216.59 Da        Isoelectric Point: 8.6049

>NTDB_id=698533 NFJ16_RS14440 WP_032936287.1 2981596..2982210(-) (sxy/tfoX) [Citrobacter freundii strain RHB02-E1-C01]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPESGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=698533 NFJ16_RS14440 WP_032936287.1 2981596..2982210(-) (sxy/tfoX) [Citrobacter freundii strain RHB02-E1-C01]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACCATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAATCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1N982

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686