Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFJ20_RS15585 Genome accession   NZ_CP099298
Coordinates   3211781..3212395 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain RHB02-E3-C01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3206781..3217395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFJ20_RS15570 (NFJ20_15550) helD 3207005..3209059 (-) 2055 WP_279273875.1 DNA helicase IV -
  NFJ20_RS15575 (NFJ20_15555) - 3209185..3209631 (+) 447 WP_003035892.1 YccF domain-containing protein -
  NFJ20_RS15580 (NFJ20_15560) yccS 3209650..3211803 (+) 2154 WP_032941200.1 YccS family putative transporter -
  NFJ20_RS15585 (NFJ20_15565) sxy/tfoX 3211781..3212395 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  NFJ20_RS15590 (NFJ20_15570) sulA 3212613..3213122 (+) 510 WP_003836838.1 SOS-induced cell division inhibitor SulA -
  NFJ20_RS15595 (NFJ20_15575) ompA 3213480..3214526 (+) 1047 WP_003035883.1 porin OmpA -
  NFJ20_RS15600 (NFJ20_15580) matP 3214615..3215067 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  NFJ20_RS15605 (NFJ20_15585) - 3215253..3217013 (+) 1761 WP_279273876.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=698510 NFJ20_RS15585 WP_003035889.1 3211781..3212395(-) (sxy/tfoX) [Citrobacter freundii strain RHB02-E3-C01]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=698510 NFJ20_RS15585 WP_003035889.1 3211781..3212395(-) (sxy/tfoX) [Citrobacter freundii strain RHB02-E3-C01]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAATGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACAATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686