Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFJ54_RS16360 Genome accession   NZ_CP099260
Coordinates   3345441..3346064 (-) Length   207 a.a.
NCBI ID   WP_279281148.1    Uniprot ID   -
Organism   Klebsiella aerogenes strain RHB08-SO-C04     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3340441..3351064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFJ54_RS16345 (NFJ54_16320) helD 3340676..3342730 (-) 2055 WP_047041726.1 DNA helicase IV -
  NFJ54_RS16350 (NFJ54_16325) - 3342854..3343300 (+) 447 WP_020079238.1 YccF domain-containing protein -
  NFJ54_RS16355 (NFJ54_16330) yccS 3343318..3345453 (+) 2136 WP_279281147.1 YccS family putative transporter -
  NFJ54_RS16360 (NFJ54_16335) sxy/tfoX 3345441..3346064 (-) 624 WP_279281148.1 TfoX/Sxy family DNA transformation protein Regulator
  NFJ54_RS16365 (NFJ54_16340) sulA 3346514..3347023 (+) 510 WP_020079240.1 SOS-induced cell division inhibitor SulA -
  NFJ54_RS16370 (NFJ54_16345) ompA 3347376..3348428 (+) 1053 WP_026612358.1 porin OmpA -
  NFJ54_RS16375 (NFJ54_16350) matP 3348520..3348972 (-) 453 WP_015367432.1 macrodomain Ter protein MatP -
  NFJ54_RS16380 (NFJ54_16355) - 3349158..3350915 (+) 1758 WP_279281149.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23596.27 Da        Isoelectric Point: 10.1362

>NTDB_id=698464 NFJ54_RS16360 WP_279281148.1 3345441..3346064(-) (sxy/tfoX) [Klebsiella aerogenes strain RHB08-SO-C04]
MKKISKLRFLQFQECLSPLGKISSRPLFGGYSLAIENTVFAMVAEGEIYLRVSEQSASYRVEHHSPMLMMRKNGRPVALK
YYRIDEALWQDSKMLFHLSQLSLHSARSEKQHQRDSGRLKNLPNISFHMELMLIHAGITDVKMLRTLGAEKSWLKLREHN
KGISINVLESLAGAIAGIHSAALPAQRRQELREWANTQGYSVEDYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=698464 NFJ54_RS16360 WP_279281148.1 3345441..3346064(-) (sxy/tfoX) [Klebsiella aerogenes strain RHB08-SO-C04]
ATGAAGAAAATTTCAAAATTACGGTTCCTCCAGTTTCAGGAGTGCCTTTCCCCCTTAGGTAAAATCAGTAGCCGGCCTTT
ATTCGGCGGGTATAGTCTGGCGATTGAAAATACCGTATTCGCCATGGTGGCTGAGGGCGAAATCTATCTTAGGGTTAGCG
AACAAAGCGCCTCTTATCGGGTTGAACATCACAGCCCGATGCTGATGATGCGCAAGAATGGCCGGCCAGTGGCCTTAAAG
TATTACCGGATAGATGAAGCACTATGGCAGGACAGTAAAATGCTGTTTCACCTATCGCAGCTGTCATTGCATTCGGCGCG
AAGCGAAAAGCAGCATCAGCGTGATTCCGGCAGACTAAAGAATTTGCCTAATATCAGCTTCCATATGGAGTTGATGTTGA
TCCATGCCGGAATAACCGATGTGAAAATGCTGCGTACACTCGGGGCGGAAAAGAGCTGGTTAAAATTGAGAGAGCATAAT
AAAGGAATATCAATCAATGTCCTTGAGTCCCTGGCGGGCGCGATTGCCGGCATTCATTCCGCCGCGCTCCCGGCGCAGCG
GCGCCAGGAGCTACGGGAGTGGGCTAATACACAAGGATACAGCGTGGAGGATTATTCCGGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

95.169

0.488