Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFJ59_RS15215 Genome accession   NZ_CP099254
Coordinates   3168211..3168825 (-) Length   204 a.a.
NCBI ID   WP_181619032.1    Uniprot ID   -
Organism   Citrobacter freundii strain RHB09-E3-C07     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3163211..3173825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFJ59_RS15200 (NFJ59_15195) helD 3163435..3165489 (-) 2055 WP_279277039.1 DNA helicase IV -
  NFJ59_RS15205 (NFJ59_15200) - 3165615..3166061 (+) 447 WP_096757638.1 YccF domain-containing protein -
  NFJ59_RS15210 (NFJ59_15205) yccS 3166080..3168242 (+) 2163 WP_279277040.1 YccS family putative transporter -
  NFJ59_RS15215 (NFJ59_15210) sxy/tfoX 3168211..3168825 (-) 615 WP_181619032.1 TfoX/Sxy family DNA transformation protein Regulator
  NFJ59_RS15220 (NFJ59_15215) sulA 3169042..3169551 (+) 510 WP_181619031.1 SOS-induced cell division inhibitor SulA -
  NFJ59_RS15225 (NFJ59_15220) ompA 3169907..3170953 (+) 1047 WP_181490379.1 porin OmpA -
  NFJ59_RS15230 (NFJ59_15225) matP 3171052..3171504 (-) 453 WP_096757641.1 macrodomain Ter protein MatP -
  NFJ59_RS15235 (NFJ59_15230) - 3171690..3173450 (+) 1761 WP_279277041.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23173.86 Da        Isoelectric Point: 9.2179

>NTDB_id=698443 NFJ59_RS15215 WP_181619032.1 3168211..3168825(-) (sxy/tfoX) [Citrobacter freundii strain RHB09-E3-C07]
MKNLSYARIYKSQEYLASLGTISYRSLFGSYSLTVGDTVFAMVANGELYLRACEQSVQYCVKHSPVWLTFMKRGRPVILN
YYQVNDALWRNHPQLVSLSRYSLDAAVKEKQMRVSQHRLRELPNISFHLETLLSEAGIKDEGTLRTLGAQMCWLKLLQIN
PSLTVKILYALEGAISGIHEAALPAVRRQELVEWVSSLVPELGH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=698443 NFJ59_RS15215 WP_181619032.1 3168211..3168825(-) (sxy/tfoX) [Citrobacter freundii strain RHB09-E3-C07]
ATGAAAAACCTCTCTTATGCCAGGATCTATAAATCACAAGAATATTTGGCCTCTTTAGGTACAATTAGCTACCGCTCTTT
ATTTGGCAGTTATAGCTTGACGGTGGGCGATACGGTCTTTGCCATGGTCGCCAACGGTGAGTTATACCTGCGGGCCTGTG
AGCAAAGCGTACAGTACTGTGTCAAACATTCCCCGGTCTGGTTGACGTTTATGAAGCGGGGACGTCCCGTGATACTCAAC
TATTATCAAGTTAATGATGCGCTGTGGCGAAACCATCCGCAGTTGGTGTCTTTATCACGATATTCGCTGGATGCCGCAGT
AAAAGAAAAACAGATGCGTGTTTCGCAACACCGGTTACGGGAACTGCCGAACATTTCCTTTCACCTGGAGACCCTGCTGA
GTGAAGCCGGAATTAAAGATGAGGGTACATTACGTACACTGGGGGCTCAAATGTGCTGGCTGAAGCTTTTGCAAATTAAC
CCATCGCTGACGGTGAAAATTCTTTATGCGCTTGAGGGTGCAATCAGTGGGATACATGAAGCCGCGCTCCCGGCGGTTCG
TCGCCAGGAGCTGGTTGAGTGGGTCAGTTCACTGGTGCCTGAACTGGGGCATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

70.647

98.529

0.696