Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFJ76_RS14765 Genome accession   NZ_CP099222
Coordinates   3039387..3040001 (-) Length   204 a.a.
NCBI ID   WP_181636939.1    Uniprot ID   -
Organism   Citrobacter freundii strain RHB13-SO-C05     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3034387..3045001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFJ76_RS14750 (NFJ76_14740) helD 3034611..3036665 (-) 2055 WP_279271118.1 DNA helicase IV -
  NFJ76_RS14755 (NFJ76_14745) - 3036791..3037237 (+) 447 WP_279271119.1 YccF domain-containing protein -
  NFJ76_RS14760 (NFJ76_14750) yccS 3037256..3039409 (+) 2154 WP_096759437.1 YccS family putative transporter -
  NFJ76_RS14765 (NFJ76_14755) sxy/tfoX 3039387..3040001 (-) 615 WP_181636939.1 TfoX/Sxy family DNA transformation protein Regulator
  NFJ76_RS14770 (NFJ76_14760) sulA 3040218..3040727 (+) 510 WP_096757640.1 SOS-induced cell division inhibitor SulA -
  NFJ76_RS14775 (NFJ76_14765) ompA 3041083..3042135 (+) 1053 WP_279271120.1 porin OmpA -
  NFJ76_RS14780 (NFJ76_14770) matP 3042234..3042686 (-) 453 WP_096757641.1 macrodomain Ter protein MatP -
  NFJ76_RS14785 (NFJ76_14775) - 3042872..3044632 (+) 1761 WP_279271121.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23224.81 Da        Isoelectric Point: 9.1904

>NTDB_id=698401 NFJ76_RS14765 WP_181636939.1 3039387..3040001(-) (sxy/tfoX) [Citrobacter freundii strain RHB13-SO-C05]
MKNLSYARIYKSQEYLASLGTISYRSLFGSYSLTVGDTVFAMVADGELYLRACEQSVQYCVKHSPVWLTFMKRGRPVILN
YYQVNDALWRNHPQLVSLSRYSLDAAVKEKQTRVSQHRLRELPNISFHLETLLSEAGINDEGTLRTLGAQMCWLKLLQIN
PSLTVKILYALEGAISGIHEAALPAVRRRELVEWVNSLKPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=698401 NFJ76_RS14765 WP_181636939.1 3039387..3040001(-) (sxy/tfoX) [Citrobacter freundii strain RHB13-SO-C05]
ATGAAAAACCTCTCTTATGCCAGGATCTATAAATCACAAGAATATTTGGCCTCTTTAGGTACAATTAGCTACCGCTCTTT
ATTTGGCAGTTATAGCTTGACGGTGGGCGATACGGTCTTTGCAATGGTTGCCGACGGTGAGTTATACCTGCGGGCCTGCG
AGCAAAGCGTACAGTACTGTGTAAAACATTCCCCAGTCTGGTTGACGTTTATGAAGCGGGGACGTCCCGTGATACTCAAC
TATTATCAAGTTAATGATGCGCTGTGGCGAAACCATCCGCAGTTGGTGTCTTTATCACGATATTCGCTGGATGCCGCAGT
AAAAGAAAAACAGACGCGTGTTTCGCAACACCGGTTACGGGAACTGCCGAACATTTCCTTTCATCTGGAGACCCTACTGA
GTGAAGCCGGGATTAACGATGAGGGTACATTACGCACCCTGGGTGCTCAAATGTGTTGGCTAAAGCTTTTGCAAATTAAC
CCATCGCTGACAGTGAAAATTCTTTATGCGCTTGAGGGCGCAATCAGTGGGATACATGAAGCAGCACTCCCGGCGGTTCG
CCGCCGGGAGTTGGTTGAGTGGGTGAATTCACTTAAGCCTGAACCGGGTTACTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.608

100

0.696