Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFJ87_RS15645 Genome accession   NZ_CP099217
Coordinates   3171908..3172522 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain RHB16-SO-C03     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3166908..3177522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFJ87_RS15630 (NFJ87_15610) helD 3167132..3169186 (-) 2055 WP_279270195.1 DNA helicase IV -
  NFJ87_RS15635 (NFJ87_15615) - 3169312..3169758 (+) 447 WP_003035892.1 YccF domain-containing protein -
  NFJ87_RS15640 (NFJ87_15620) yccS 3169777..3171930 (+) 2154 WP_213353587.1 YccS family putative transporter -
  NFJ87_RS15645 (NFJ87_15625) sxy/tfoX 3171908..3172522 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  NFJ87_RS15650 (NFJ87_15630) sulA 3172740..3173249 (+) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  NFJ87_RS15655 (NFJ87_15635) ompA 3173607..3174665 (+) 1059 WP_003836839.1 porin OmpA -
  NFJ87_RS15660 (NFJ87_15640) matP 3174757..3175209 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  NFJ87_RS15665 (NFJ87_15645) - 3175395..3177155 (+) 1761 WP_003035878.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=698380 NFJ87_RS15645 WP_003035889.1 3171908..3172522(-) (sxy/tfoX) [Citrobacter freundii strain RHB16-SO-C03]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=698380 NFJ87_RS15645 WP_003035889.1 3171908..3172522(-) (sxy/tfoX) [Citrobacter freundii strain RHB16-SO-C03]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCAATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686