Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFK38_RS16685 Genome accession   NZ_CP099140
Coordinates   3353974..3354570 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain RHB28-SO-C05     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3348974..3359570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFK38_RS16670 (NFK38_16655) helD 3349182..3351236 (-) 2055 WP_004179218.1 DNA helicase IV -
  NFK38_RS16675 (NFK38_16660) - 3351361..3351807 (+) 447 WP_002898425.1 YccF domain-containing protein -
  NFK38_RS16680 (NFK38_16665) yccS 3351825..3353960 (+) 2136 WP_002898422.1 YccS family putative transporter -
  NFK38_RS16685 (NFK38_16670) sxy/tfoX 3353974..3354570 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  NFK38_RS16690 (NFK38_16675) sulA 3354919..3355428 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  NFK38_RS16695 (NFK38_16680) ompA 3355781..3356851 (+) 1071 WP_002898408.1 porin OmpA -
  NFK38_RS16700 (NFK38_16685) matP 3356983..3357435 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  NFK38_RS16705 (NFK38_16690) - 3357621..3359378 (+) 1758 WP_049186461.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=698356 NFK38_RS16685 WP_004150836.1 3353974..3354570(-) (sxy/tfoX) [Klebsiella pneumoniae strain RHB28-SO-C05]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=698356 NFK38_RS16685 WP_004150836.1 3353974..3354570(-) (sxy/tfoX) [Klebsiella pneumoniae strain RHB28-SO-C05]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCCACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51