Detailed information NTG0698354

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP49_RS26105
• Genome accession: NZ_CP115244
• Coordinates: 5644708..5645712 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F042
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5639708..5650712

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP49_RS26090 (PCP49_26085)	-	5640190..5641197 (+)	1008	WP_012613731.1	TolB family protein	-
PCP49_RS26095 (PCP49_26090)	mutS	5641323..5643890 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PCP49_RS26100 (PCP49_26095)	fdxA	5643957..5644280 (+)	324	WP_003092272.1	ferredoxin FdxA	-
PCP49_RS26105 (PCP49_26100)	rpoS	5644708..5645712 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP49_RS26110 (PCP49_26105)	-	5645817..5646710 (-)	894	WP_033981793.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP49_RS26115 (PCP49_26110)	-	5646756..5647391 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP49_RS26120 (PCP49_26115)	surE	5647424..5648173 (-)	750	WP_033981791.1	5'/3'-nucleotidase SurE	-
PCP49_RS26125 (PCP49_26120)	truD	5648161..5649228 (-)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
PCP49_RS26130 (PCP49_26125)	ispF	5649225..5649698 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP49_RS26135 (PCP49_26130)	fghA	5649769..5650620 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=698354 PCP49_RS26105 WP_003113871.1 5644708..5645712(-) (rpoS) [Pseudomonas aeruginosa strain F042]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=698354 PCP49_RS26105 WP_003113871.1 5644708..5645712(-) (rpoS) [Pseudomonas aeruginosa strain F042]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653