Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HXS62_RS15880 Genome accession   NZ_AP023230
Coordinates   3323309..3323824 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain YJ4     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3318309..3328824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS62_RS15835 csrA 3318896..3319081 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  HXS62_RS15865 yqaB 3320539..3321105 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HXS62_RS15870 yqaA 3321102..3321530 (+) 429 WP_176486912.1 YqaA family protein -
  HXS62_RS15875 gshA 3321603..3323159 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  HXS62_RS15880 luxS 3323309..3323824 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  HXS62_RS15885 emrB 3323888..3325426 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  HXS62_RS15890 emrA 3325443..3326615 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HXS62_RS15895 emrR 3326742..3327272 (-) 531 WP_000378447.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  HXS62_RS15900 ygaH 3327363..3327698 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  HXS62_RS15905 ygaZ 3327688..3328425 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=69835 HXS62_RS15880 WP_001130211.1 3323309..3323824(+) (luxS) [Escherichia coli strain YJ4]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=69835 HXS62_RS15880 WP_001130211.1 3323309..3323824(+) (luxS) [Escherichia coli strain YJ4]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment