Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFK47_RS14995 Genome accession   NZ_CP099128
Coordinates   3061687..3062301 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain RHB31-E4-C06     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3056687..3067301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFK47_RS14980 (NFK47_14960) helD 3056911..3058965 (-) 2055 WP_096889538.1 DNA helicase IV -
  NFK47_RS14985 (NFK47_14965) - 3059091..3059537 (+) 447 WP_003035892.1 YccF domain-containing protein -
  NFK47_RS14990 (NFK47_14970) yccS 3059556..3061709 (+) 2154 WP_032941200.1 YccS family putative transporter -
  NFK47_RS14995 (NFK47_14975) sxy/tfoX 3061687..3062301 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  NFK47_RS15000 (NFK47_14980) sulA 3062519..3063028 (+) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  NFK47_RS15005 (NFK47_14985) ompA 3063386..3064444 (+) 1059 WP_003836839.1 porin OmpA -
  NFK47_RS15010 (NFK47_14990) matP 3064536..3064988 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  NFK47_RS15015 (NFK47_14995) - 3065174..3066934 (+) 1761 WP_003035878.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=698334 NFK47_RS14995 WP_003035889.1 3061687..3062301(-) (sxy/tfoX) [Citrobacter freundii strain RHB31-E4-C06]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=698334 NFK47_RS14995 WP_003035889.1 3061687..3062301(-) (sxy/tfoX) [Citrobacter freundii strain RHB31-E4-C06]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACCATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686