Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NFL15_RS15270 Genome accession   NZ_CP099037
Coordinates   3115109..3115723 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain RHB44-SO-C05     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3110109..3120723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NFL15_RS15255 (NFL15_15230) helD 3110333..3112387 (-) 2055 WP_202580630.1 DNA helicase IV -
  NFL15_RS15260 (NFL15_15235) - 3112513..3112959 (+) 447 WP_003035892.1 YccF domain-containing protein -
  NFL15_RS15265 (NFL15_15240) yccS 3112978..3115131 (+) 2154 WP_032939270.1 YccS family putative transporter -
  NFL15_RS15270 (NFL15_15245) sxy/tfoX 3115109..3115723 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  NFL15_RS15275 (NFL15_15250) sulA 3115941..3116450 (+) 510 WP_032948945.1 SOS-induced cell division inhibitor SulA -
  NFL15_RS15280 (NFL15_15255) ompA 3116808..3117866 (+) 1059 WP_003836839.1 porin OmpA -
  NFL15_RS15285 (NFL15_15260) matP 3117956..3118408 (-) 453 WP_202580631.1 macrodomain Ter protein MatP -
  NFL15_RS15290 (NFL15_15265) - 3118594..3120354 (+) 1761 WP_003035878.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=698311 NFL15_RS15270 WP_003035889.1 3115109..3115723(-) (sxy/tfoX) [Citrobacter freundii strain RHB44-SO-C05]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=698311 NFL15_RS15270 WP_003035889.1 3115109..3115723(-) (sxy/tfoX) [Citrobacter freundii strain RHB44-SO-C05]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686