Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NF668_RS01445 Genome accession   NZ_CP098925
Coordinates   333752..335137 (-) Length   461 a.a.
NCBI ID   WP_301557245.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain grey     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 328752..340137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF668_RS01430 (NF668_01425) - 329682..330173 (-) 492 WP_013815458.1 3'-5' exonuclease -
  NF668_RS01435 (NF668_01430) - 330177..330815 (-) 639 WP_004583870.1 MarC family protein -
  NF668_RS01440 (NF668_01435) - 330997..333690 (-) 2694 WP_301557244.1 transglutaminase-like domain-containing protein -
  NF668_RS01445 (NF668_01440) radA 333752..335137 (-) 1386 WP_301557245.1 DNA repair protein RadA Machinery gene
  NF668_RS01450 (NF668_01445) - 335183..336109 (-) 927 WP_005873520.1 arginine deiminase family protein -
  NF668_RS11030 - 336273..336386 (-) 114 WP_143734924.1 DUF1661 domain-containing protein -
  NF668_RS01460 (NF668_01455) fsa 338103..338765 (+) 663 WP_234231850.1 fructose-6-phosphate aldolase -
  NF668_RS01465 (NF668_01460) - 338762..340060 (+) 1299 WP_305156987.1 DUF1343 domain-containing protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 51074.89 Da        Isoelectric Point: 6.8170

>NTDB_id=698291 NF668_RS01445 WP_301557245.1 333752..335137(-) (radA) [Porphyromonas gingivalis strain grey]
MAKEKTIYVCRSCGTKYAKWQGNCNACGEWNCIDEEKVPAPASGKHAAKNFMPREQDNRPRLLQDVESGDEERIRLGDEE
FDRVLGGGIVKGAFVLLGGEPGIGKSTLILQTVLRLPQLRTLYVSGEESARQLKMRAERLGQAMNECYVYCETNIERILS
RAEELTPDLLVIDSIQTVYTEEMESSAGSVGQIRECAALLLKYCKTTGIPVIVIGHITKEGSIAGPKVLEHIVDTVLLFD
GDKHHLYRILRGQKNRYGSTSELGIYEMRQDGLRGVENPSEHLITRNREDLSGIAIAVAMEGIRPILIEAQALVSSAIYA
NPQRSATGFDIRRMNMLLAVLEKRAGFKLIQKDVFLNIAGGIKIADPATDLAVISAVLASSLDIVIPPAVCMTGEVGLSG
EIRPVSRIEQRITEARRIGFKEILVPADNFRQEDAGRFGIRLVPVRKVEEAFRHLFSKERE

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=698291 NF668_RS01445 WP_301557245.1 333752..335137(-) (radA) [Porphyromonas gingivalis strain grey]
ATGGCTAAGGAGAAAACGATCTACGTCTGCCGTTCGTGCGGAACCAAATACGCCAAATGGCAAGGCAACTGCAATGCCTG
TGGAGAGTGGAACTGCATTGATGAGGAGAAGGTGCCGGCACCGGCATCGGGCAAGCATGCAGCCAAGAATTTTATGCCTC
GGGAGCAGGACAACCGGCCAAGACTCTTACAGGATGTGGAGTCCGGCGATGAAGAGCGTATTCGCCTCGGCGATGAAGAG
TTCGACCGCGTACTGGGTGGAGGAATTGTCAAAGGAGCCTTTGTCCTGCTTGGCGGCGAGCCGGGAATCGGTAAGTCCAC
GCTTATCCTCCAGACGGTGCTGCGTCTGCCGCAGTTGCGCACGCTCTATGTGTCGGGTGAAGAAAGTGCCCGACAACTGA
AGATGCGCGCCGAACGACTGGGGCAAGCCATGAATGAGTGCTACGTATACTGCGAAACGAATATAGAGAGGATACTCTCC
CGTGCAGAAGAACTCACACCCGATCTCCTCGTGATAGACTCTATACAGACGGTCTATACCGAGGAAATGGAAAGCTCGGC
CGGCAGCGTGGGGCAGATCCGCGAATGTGCCGCCTTACTGCTCAAATACTGCAAGACTACGGGTATCCCCGTCATCGTCA
TCGGGCACATCACCAAAGAAGGTAGCATAGCCGGACCGAAGGTACTGGAGCATATAGTGGATACGGTGCTCCTCTTCGAC
GGGGATAAGCATCATCTCTACCGGATACTCCGAGGACAGAAGAACCGCTATGGCAGTACTTCCGAGCTGGGGATATACGA
GATGCGGCAGGACGGTCTGCGTGGCGTGGAGAATCCGAGCGAACATCTCATCACACGCAATAGGGAAGACCTCAGTGGCA
TAGCCATAGCCGTAGCGATGGAGGGCATTCGCCCGATACTCATCGAAGCGCAGGCTTTGGTCAGCTCGGCCATTTATGCC
AATCCGCAGCGTTCGGCCACGGGCTTCGATATTCGGCGGATGAACATGCTCTTAGCCGTACTGGAGAAACGTGCCGGCTT
CAAGCTCATACAGAAGGATGTGTTTCTGAACATTGCCGGAGGTATCAAAATAGCCGATCCGGCTACGGATCTGGCCGTTA
TCTCGGCAGTGCTGGCGTCGAGTCTGGACATCGTTATCCCGCCGGCCGTATGCATGACGGGCGAGGTCGGACTCTCCGGA
GAGATACGTCCTGTGAGCCGCATCGAGCAGCGCATTACGGAAGCGCGTCGCATAGGGTTCAAAGAGATATTGGTGCCGGC
CGATAATTTCCGGCAGGAAGATGCCGGCCGCTTCGGTATTCGGCTCGTTCCGGTCAGAAAGGTGGAGGAAGCCTTCCGCC
ATCTGTTCTCGAAAGAAAGAGAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(343-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

98.915

0.482
  radA Streptococcus pneumoniae Rx1

45.852

99.349

0.456
  radA Streptococcus pneumoniae D39

45.852

99.349

0.456
  radA Streptococcus pneumoniae R6

45.852

99.349

0.456
  radA Streptococcus pneumoniae TIGR4

45.852

99.349

0.456
  radA Streptococcus mitis NCTC 12261

45.852

99.349

0.456
  radA Streptococcus mitis SK321

45.852

99.349

0.456