Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | EP162_RS00145 | Genome accession | NZ_AP018524 |
| Coordinates | 40871..42241 (+) | Length | 456 a.a. |
| NCBI ID | WP_048590062.1 | Uniprot ID | - |
| Organism | Melissococcus plutonius strain DAT585 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 35871..47241
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EP162_RS00135 (DAT585_0027) | - | 36604..39249 (-) | 2646 | WP_013772969.1 | YfhO family protein | - |
| EP162_RS00140 (DAT585_0028) | - | 40291..40770 (+) | 480 | WP_013772970.1 | dUTP diphosphatase | - |
| EP162_RS00145 (DAT585_0029) | radA | 40871..42241 (+) | 1371 | WP_048590062.1 | DNA repair protein RadA | Machinery gene |
| EP162_RS00150 (DAT585_0030) | - | 42542..43681 (+) | 1140 | WP_013772972.1 | PIN/TRAM domain-containing protein | - |
| EP162_RS00155 (DAT585_0031) | gltX | 44204..45664 (+) | 1461 | WP_013772973.1 | glutamate--tRNA ligase | - |
Sequence
Protein
Download Length: 456 a.a. Molecular weight: 50015.88 Da Isoelectric Point: 8.5501
>NTDB_id=69828 EP162_RS00145 WP_048590062.1 40871..42241(+) (radA) [Melissococcus plutonius strain DAT585]
MAKKTKSQFECQSCGYVSPKYLGRCPNCGKWNSMTEEIIQDTTDRRTRISLTGKKVQPQRLTEVIPKKEPRIKTQLAELN
RVLGGGVVPGSLLLIGGDPGIGKSTLLLQVSQQLAMIGGKVLYVSGEESAEQIKMRAERLGTINTEFYLYAETDMSSIAK
SIEELMPDYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKLAKTNNIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE
GDKHHTFRILRTVKNRFGSTNEIGIFEMHDYGLTEVTNPSQMFLEERLADDAGSAIVAALEGTRPILVEIQALITPTVFG
TAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKINEPAIDLAIAVSIASSYKEKGTKASECFIGEIGLTG
EIRRVANVEQRVREAQKLGFTKIYLPKNNLGGWTPPKGIEVVGVMTISETIKKIFQ
MAKKTKSQFECQSCGYVSPKYLGRCPNCGKWNSMTEEIIQDTTDRRTRISLTGKKVQPQRLTEVIPKKEPRIKTQLAELN
RVLGGGVVPGSLLLIGGDPGIGKSTLLLQVSQQLAMIGGKVLYVSGEESAEQIKMRAERLGTINTEFYLYAETDMSSIAK
SIEELMPDYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKLAKTNNIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE
GDKHHTFRILRTVKNRFGSTNEIGIFEMHDYGLTEVTNPSQMFLEERLADDAGSAIVAALEGTRPILVEIQALITPTVFG
TAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKINEPAIDLAIAVSIASSYKEKGTKASECFIGEIGLTG
EIRRVANVEQRVREAQKLGFTKIYLPKNNLGGWTPPKGIEVVGVMTISETIKKIFQ
Nucleotide
Download Length: 1371 bp
>NTDB_id=69828 EP162_RS00145 WP_048590062.1 40871..42241(+) (radA) [Melissococcus plutonius strain DAT585]
ATGGCGAAAAAGACGAAAAGTCAATTCGAATGTCAAAGTTGTGGCTATGTATCTCCGAAGTACTTGGGACGTTGTCCTAA
TTGTGGTAAATGGAATTCAATGACCGAAGAAATCATACAAGATACAACTGATCGACGTACACGAATTAGTTTAACAGGAA
AAAAAGTGCAACCTCAACGATTAACAGAGGTTATTCCTAAAAAAGAGCCAAGAATAAAAACGCAATTAGCAGAATTAAAT
CGTGTTCTAGGTGGAGGAGTTGTGCCTGGATCTCTCCTTTTAATTGGCGGTGATCCTGGAATTGGAAAATCAACCTTGCT
TTTACAAGTCTCCCAACAATTGGCAATGATTGGTGGCAAGGTCCTCTATGTTTCTGGTGAAGAGAGCGCAGAACAAATTA
AAATGCGTGCTGAACGATTGGGAACAATCAATACAGAATTCTATCTATACGCAGAAACTGATATGTCAAGCATTGCTAAA
TCCATTGAAGAATTGATGCCTGATTATGTCATCATTGATTCTATTCAAACGATGACGCAACCTGATATAACCAGTGTTGC
TGGCAGTGTTAGCCAAGTTCGAGAAACGACAGCTGAATTGTTGAAACTAGCTAAAACCAATAATATTGCTATTTTTATTG
TTGGACATGTCACAAAGGAAGGATCAATTGCCGGTCCAAGAATGCTAGAACATATGGTTGATACGGTTTTATATTTTGAA
GGAGACAAGCACCATACCTTTCGGATTTTACGTACTGTCAAAAATCGGTTTGGTTCAACCAATGAAATTGGTATCTTTGA
AATGCATGATTATGGCTTAACTGAGGTTACTAACCCTTCACAAATGTTTTTGGAGGAACGTTTGGCAGATGATGCAGGCT
CTGCCATTGTTGCTGCCTTGGAAGGTACTCGACCTATTTTGGTAGAAATTCAAGCTTTAATAACACCAACGGTTTTTGGA
ACTGCTAAGCGAACGACTACTGGATTAGATTTTAATCGGGTTTCATTAATCATGGCTGTTTTGGAAAAAAGAGCCGGATT
ACTTTTACAAAATCAAGATGCCTATCTAAAGGCAGCTGGTGGGGTAAAAATTAATGAACCAGCAATTGATCTGGCGATAG
CTGTAAGCATTGCTTCTAGTTACAAAGAAAAAGGAACAAAAGCTTCAGAATGTTTTATTGGTGAAATTGGCTTGACCGGA
GAAATTAGACGTGTGGCAAACGTGGAACAACGTGTCCGAGAAGCTCAAAAGCTAGGTTTTACTAAAATTTATTTACCGAA
AAATAATTTGGGCGGTTGGACGCCACCTAAAGGGATTGAAGTAGTTGGTGTTATGACGATCTCTGAAACCATTAAAAAAA
TCTTTCAATGA
ATGGCGAAAAAGACGAAAAGTCAATTCGAATGTCAAAGTTGTGGCTATGTATCTCCGAAGTACTTGGGACGTTGTCCTAA
TTGTGGTAAATGGAATTCAATGACCGAAGAAATCATACAAGATACAACTGATCGACGTACACGAATTAGTTTAACAGGAA
AAAAAGTGCAACCTCAACGATTAACAGAGGTTATTCCTAAAAAAGAGCCAAGAATAAAAACGCAATTAGCAGAATTAAAT
CGTGTTCTAGGTGGAGGAGTTGTGCCTGGATCTCTCCTTTTAATTGGCGGTGATCCTGGAATTGGAAAATCAACCTTGCT
TTTACAAGTCTCCCAACAATTGGCAATGATTGGTGGCAAGGTCCTCTATGTTTCTGGTGAAGAGAGCGCAGAACAAATTA
AAATGCGTGCTGAACGATTGGGAACAATCAATACAGAATTCTATCTATACGCAGAAACTGATATGTCAAGCATTGCTAAA
TCCATTGAAGAATTGATGCCTGATTATGTCATCATTGATTCTATTCAAACGATGACGCAACCTGATATAACCAGTGTTGC
TGGCAGTGTTAGCCAAGTTCGAGAAACGACAGCTGAATTGTTGAAACTAGCTAAAACCAATAATATTGCTATTTTTATTG
TTGGACATGTCACAAAGGAAGGATCAATTGCCGGTCCAAGAATGCTAGAACATATGGTTGATACGGTTTTATATTTTGAA
GGAGACAAGCACCATACCTTTCGGATTTTACGTACTGTCAAAAATCGGTTTGGTTCAACCAATGAAATTGGTATCTTTGA
AATGCATGATTATGGCTTAACTGAGGTTACTAACCCTTCACAAATGTTTTTGGAGGAACGTTTGGCAGATGATGCAGGCT
CTGCCATTGTTGCTGCCTTGGAAGGTACTCGACCTATTTTGGTAGAAATTCAAGCTTTAATAACACCAACGGTTTTTGGA
ACTGCTAAGCGAACGACTACTGGATTAGATTTTAATCGGGTTTCATTAATCATGGCTGTTTTGGAAAAAAGAGCCGGATT
ACTTTTACAAAATCAAGATGCCTATCTAAAGGCAGCTGGTGGGGTAAAAATTAATGAACCAGCAATTGATCTGGCGATAG
CTGTAAGCATTGCTTCTAGTTACAAAGAAAAAGGAACAAAAGCTTCAGAATGTTTTATTGGTGAAATTGGCTTGACCGGA
GAAATTAGACGTGTGGCAAACGTGGAACAACGTGTCCGAGAAGCTCAAAAGCTAGGTTTTACTAAAATTTATTTACCGAA
AAATAATTTGGGCGGTTGGACGCCACCTAAAGGGATTGAAGTAGTTGGTGTTATGACGATCTCTGAAACCATTAAAAAAA
TCTTTCAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Streptococcus mitis NCTC 12261 |
72.088 |
99.781 |
0.719 |
| radA | Streptococcus mitis SK321 |
71.868 |
99.781 |
0.717 |
| radA | Streptococcus pneumoniae Rx1 |
71.868 |
99.781 |
0.717 |
| radA | Streptococcus pneumoniae D39 |
71.868 |
99.781 |
0.717 |
| radA | Streptococcus pneumoniae R6 |
71.868 |
99.781 |
0.717 |
| radA | Streptococcus pneumoniae TIGR4 |
71.868 |
99.781 |
0.717 |
| radA | Bacillus subtilis subsp. subtilis str. 168 |
66.075 |
98.904 |
0.654 |