Detailed information NTG0698233

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP27_RS19980
• Genome accession: NZ_CP115243
• Coordinates: 4285716..4286720 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F043
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4280716..4291720

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP27_RS19950 (PCP27_19945)	fghA	4280808..4281659 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PCP27_RS19955 (PCP27_19950)	ispF	4281730..4282203 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP27_RS19960 (PCP27_19955)	truD	4282200..4283267 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
PCP27_RS19965 (PCP27_19960)	surE	4283255..4284004 (+)	750	WP_033981791.1	5'/3'-nucleotidase SurE	-
PCP27_RS19970 (PCP27_19965)	-	4284037..4284672 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP27_RS19975 (PCP27_19970)	-	4284718..4285611 (+)	894	WP_033981793.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP27_RS19980 (PCP27_19975)	rpoS	4285716..4286720 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP27_RS19985 (PCP27_19980)	fdxA	4287148..4287471 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PCP27_RS19990 (PCP27_19985)	mutS	4287538..4290105 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PCP27_RS19995 (PCP27_19990)	-	4290231..4291238 (-)	1008	WP_012613731.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=698233 PCP27_RS19980 WP_003113871.1 4285716..4286720(+) (rpoS) [Pseudomonas aeruginosa strain F043]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=698233 PCP27_RS19980 WP_003113871.1 4285716..4286720(+) (rpoS) [Pseudomonas aeruginosa strain F043]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653