Detailed information NTG0698202

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: NF347_RS05435
• Genome accession: NZ_CP098825
• Coordinates: 1213800..1215167 (+)
• Length: 455 a.a.
• NCBI ID: WP_107034734.1
• Uniprot ID: -
• Organism: Paramuribaculum intestinale strain DSM 100764
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1208800..1220167

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NF347_RS05420 (NF347_05410)	-	1210421..1210945 (+)	525	WP_107034731.1	ATP-binding protein	-
NF347_RS05425 (NF347_05415)	-	1211127..1212707 (-)	1581	WP_107034732.1	peptide chain release factor 3	-
NF347_RS05430 (NF347_05420)	-	1212793..1213557 (+)	765	WP_161553864.1	RNA methyltransferase	-
NF347_RS05435 (NF347_05425)	radA	1213800..1215167 (+)	1368	WP_107034734.1	DNA repair protein RadA	Machinery gene
NF347_RS05440 (NF347_05430)	-	1215184..1216068 (+)	885	WP_107034735.1	DMT family transporter	-
NF347_RS05445 (NF347_05435)	-	1216205..1218358 (+)	2154	WP_161953367.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49730.47 Da
• Isoelectric Point: 7.6022

>NTDB_id=698202 NF347_RS05435 WP_107034734.1 1213800..1215167(+) (radA) [Paramuribaculum intestinale strain DSM 100764]
MAKTKTVWVCSSCGNDFPKWEGRCSACGAWNTLVEEKVTISSQTRAKSGMTSRQRPRPLRVSEIETSDAPRIRMPSKELN
RVLGGGLVPGSMVLIGGEPGIGKSTLVLQNTLSIQSRRVLYVSGEESAMQIKMRAERLGRQSDTVYIVCDTSLENIFEHI
ENTDPGLIVIDSIQTIASDELESPAGSVGQVRECSARLLRYAKESGVPVIVIGHITKEGNIAGPKVLEHIVDTVLQFEGD
RHYLYRLLRSIKNRFGSTSELGIYEMVRSGLREVTNPSEILLSQTDTNLSGTSIGVTMEGIRPLMIEVQALVSTAAYGTP
QRSVTGFDAKRMNMLLAVLEKRVGFKLAQKDVFLNIAGGMKVNDPALDMAVISAILSSNVDIVVPHTVCMAGEVGLTGEI
RPVTRIEQRIQEAEKLGMEQIIIPRSNVKGMDLGSLNIKITEVSKVEEAFRLLFA

Nucleotide

• Length: 1368 bp

>NTDB_id=698202 NF347_RS05435 WP_107034734.1 1213800..1215167(+) (radA) [Paramuribaculum intestinale strain DSM 100764]
ATGGCAAAAACAAAGACCGTGTGGGTGTGCAGTTCGTGCGGAAACGACTTTCCGAAGTGGGAAGGACGATGCAGCGCGTG
CGGAGCATGGAACACCCTTGTGGAAGAGAAGGTGACTATATCGTCGCAGACACGCGCCAAGAGCGGAATGACATCGCGAC
AGCGTCCACGCCCACTGCGTGTGTCGGAAATCGAAACATCCGACGCTCCACGCATACGCATGCCGAGCAAGGAACTCAAC
CGAGTGCTCGGCGGCGGCCTTGTCCCCGGCTCGATGGTGCTTATCGGCGGCGAGCCCGGCATTGGTAAATCCACCCTGGT
GCTACAGAACACATTGTCGATACAATCGCGTCGCGTGCTTTACGTTTCGGGCGAGGAGAGCGCTATGCAGATAAAGATGC
GTGCCGAACGCCTCGGACGTCAGAGCGACACGGTGTATATCGTGTGCGACACATCGCTTGAAAACATTTTCGAGCATATC
GAGAACACAGATCCCGGACTGATCGTCATCGATTCGATACAGACCATAGCTTCCGATGAACTTGAATCTCCGGCCGGAAG
CGTAGGCCAGGTAAGAGAGTGCTCGGCACGGTTGCTGCGATATGCCAAAGAGAGCGGTGTGCCGGTGATTGTGATCGGCC
ACATAACCAAAGAGGGCAATATCGCCGGGCCTAAAGTACTGGAACACATTGTTGATACCGTATTGCAGTTTGAAGGCGAC
CGACATTATCTGTATAGGTTGCTCCGGTCGATCAAAAACCGATTCGGAAGCACGTCCGAACTCGGCATTTACGAAATGGT
GCGTAGCGGTCTGCGGGAGGTCACCAATCCTTCGGAGATACTGTTGTCGCAGACCGACACCAATCTGTCGGGCACCTCGA
TAGGTGTGACGATGGAGGGTATTCGTCCGCTGATGATCGAGGTGCAGGCTCTTGTGAGCACTGCCGCCTATGGCACACCG
CAACGGTCTGTGACCGGCTTTGACGCCAAAAGGATGAATATGTTGCTTGCCGTACTGGAGAAGCGCGTGGGGTTCAAATT
GGCCCAGAAGGACGTGTTTCTCAATATAGCCGGAGGCATGAAGGTCAATGATCCGGCTCTTGACATGGCCGTGATCAGCG
CCATCCTGTCGAGCAATGTGGACATTGTGGTGCCTCATACCGTGTGTATGGCCGGGGAAGTGGGACTTACCGGCGAGATT
CGCCCTGTCACCCGCATAGAACAACGCATACAGGAGGCTGAGAAACTCGGCATGGAGCAAATCATCATACCACGGAGCAA
TGTCAAGGGTATGGATCTCGGATCGCTGAATATAAAGATCACTGAAGTCAGCAAAGTGGAAGAGGCCTTCCGACTGCTGT
TTGCATAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (62-219)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (330-427)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.781	100	0.499
radA	Streptococcus pneumoniae Rx1	47.588	100	0.477
radA	Streptococcus pneumoniae D39	47.588	100	0.477
radA	Streptococcus pneumoniae R6	47.588	100	0.477
radA	Streptococcus pneumoniae TIGR4	47.588	100	0.477
radA	Streptococcus mitis SK321	47.368	100	0.475
radA	Streptococcus mitis NCTC 12261	47.368	100	0.475